View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084-Insertion-4 (Length: 740)
Name: NF5084-Insertion-4
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 7 - 740
Target Start/End: Complemental strand, 36136254 - 36135521
Alignment:
| Q |
7 |
agattttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaagcaaaatatcacactcaaaagtggaaaaatatcattgctctta |
106 |
Q |
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| T |
36136254 |
agattttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaaacaaaatatcacactcaaaagtggaaaaatatcattgctctta |
36136155 |
T |
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| Q |
107 |
agaatatactgcagacacttcatacaacttctatattcagcgaacaaattaacgnnnnnnncttacacgtatgtaacagaaacatcttaaataaaaagaa |
206 |
Q |
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| T |
36136154 |
agaatatactgcagacacttcatacaacttctatattcagcgaacaaattaacgtttttttcttacacgtatgtaacagaaacatcttaaataaaaagaa |
36136055 |
T |
|
| Q |
207 |
ttgttccgatgtaggttttaaagttaaatacctttactgttgctacgctgctacgccccaggttgttgcttgcccgcagagaatcaataatattgatgtg |
306 |
Q |
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| T |
36136054 |
ttgttccgatgaaggttttaaagttatatacctttactgatgctacgcggctacgccccaggttgttgcttgcccgcagagaatcaataatattgatgtg |
36135955 |
T |
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| Q |
307 |
tttgaaaacaaaatgcttctcgtgattttcctggttgcaccaaccataatagaacttacaagcaataagaaagctttctgtgagcagtaagtcttggcga |
406 |
Q |
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| T |
36135954 |
tttggaaacaaaatgcttctcgtgattttcctggttgcaccaaccataacagaacttacaagcaataagaaagctttctgtgagcagtaagtcttggcga |
36135855 |
T |
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| Q |
407 |
tcttttcttggacatccggctgtcacgattttgaattcaggatnnnnnnngagagtaaaggctatcattcataatgaagagaacatattattcaagatat |
506 |
Q |
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| T |
36135854 |
tcttttcttggacatccggctgtcgcgattttgaattcaggataaaaaaagagagtaaaggctatcattcataatgaagagaacatattattcaagatat |
36135755 |
T |
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| Q |
507 |
atgatcaactcaatcatatatgcataacaataggatcaaaataacataaatttaattttcttattcttcataagccatattaatgttaatatatacatca |
606 |
Q |
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| T |
36135754 |
atgatcaactcaatcatatatgcataacaataggatcaaaataacataaatttaattttcttattcttcataagccatattaatgttaatatatacatca |
36135655 |
T |
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| Q |
607 |
aaataatcaagtttgtcacctcaaatggtccaacaaattcattgttgtaaagattaaatatgtagaggactaaaatttccaacacataagttgaaaagag |
706 |
Q |
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| T |
36135654 |
aaataatcaagtttgtcacctcaaatggtccaacaaattcattgttgtaaagattaaatatgtagaggactaaaatttccaacacataagttgaaaagag |
36135555 |
T |
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| Q |
707 |
tccgctcttagaacccaagagacgactctcatgg |
740 |
Q |
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| T |
36135554 |
tccactcttagaacccaagagacgactctcatgg |
36135521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 70 - 519
Target Start/End: Complemental strand, 41337737 - 41337294
Alignment:
| Q |
70 |
tatcacactcaaaagtggaaaaatatcattgctcttaagaatatactgcagacacttcatacaacttctatattcagcgaacaaattaacgnnnnnnn-c |
168 |
Q |
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| T |
41337737 |
tatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgtagacacttcatacaccttctatattcagcgaacaaatcaacgttctttttc |
41337638 |
T |
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| Q |
169 |
ttacacgtatgtaacagaaacatcttaaataaaaagaattgttccgatgtaggttttaaagttaaatacctttactgttgctacgctgctacgccccagg |
268 |
Q |
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| T |
41337637 |
ttacacgtatgtaacagaatcatctttgataaaa-gaattgtttcaatgaaggttttaaagtgaaatacctctactgatgctatgc--------cccagg |
41337547 |
T |
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| Q |
269 |
ttgttgcttgcccgcagagaatcaataatattgatgtgtttgaaaacaaaatgcttctcgtgattttcctggttgcaccaaccataatagaacttacaag |
368 |
Q |
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| T |
41337546 |
ttgttgttttcctgcagaggatcaataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaaccataacagaactttgaag |
41337447 |
T |
|
| Q |
369 |
caataagaaagctttctgtgagcagtaagtcttggcgatcttttcttggacatccggctgtcacgattttgaattcagga--tnnnnnnngagagtaaag |
466 |
Q |
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| T |
41337446 |
caataagaaagctttctgtgagcagcaagtcttggcgatcttttcttggacaatcagctatcgcaattttgaattcagaaagaaaaaaaaaagagtaaat |
41337347 |
T |
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| Q |
467 |
gctatcattcataatgaagagaacatattattcaagatatatgatcaactcaa |
519 |
Q |
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| T |
41337346 |
gctatcattcataatgaagagaacatattattcaagatatatgatcaactcaa |
41337294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 532 - 740
Target Start/End: Complemental strand, 41337161 - 41336953
Alignment:
| Q |
532 |
aacaataggatcaaaataacataaatttaattttcttattcttcataagccatattaatgttaatatatacatcaaaataatcaagtttgtcacctcaaa |
631 |
Q |
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||||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41337161 |
aacaataagatcaaaataacataaattttatcttcttatccttcataagccatattaatattaatatatacatcaaaataatcaagtttgtcacctcaag |
41337062 |
T |
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| Q |
632 |
tggtccaacaaattcattgttgtaaagattaaatatgtagaggactaaaatttccaacacataagttgaaaagagtccgctcttagaacccaagagacga |
731 |
Q |
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| T |
41337061 |
tggtccaacaaattcattgttgtaaagattaaataagtataggactaaaatttccaacgcataagttgaaaagagtccactcttagaacccaagagacga |
41336962 |
T |
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| Q |
732 |
ctctcatgg |
740 |
Q |
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| T |
41336961 |
ctctcatgg |
41336953 |
T |
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Back To:
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