View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084-Insertion-5 (Length: 593)
Name: NF5084-Insertion-5
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 244 - 590
Target Start/End: Original strand, 55384740 - 55385081
Alignment:
| Q |
244 |
agtgttatactaattaatacagataaaaactgttacctaagacaagcaatatatattttttgatctgttactattattactttacaggtgcacatacatt |
343 |
Q |
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| T |
55384740 |
agtgttatactaattaatacagataaaaactgttacctaagacaagcaatag----tttttgatctgttactattattattttacaggtgcacatacatt |
55384835 |
T |
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| Q |
344 |
aggtgttggacactgcttaagcattgttggcagattgtataatcaaaatcaacagataggaaacaatatgaatttgggttatgaaacctcactaagacta |
443 |
Q |
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| T |
55384836 |
aggtgttggacactgcttaagcattgttggcagattgtataatcaaaatcaacagataggaaacaatatgaatttgggttatgaaacctcactaagacta |
55384935 |
T |
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| Q |
444 |
gcatgcccaactgttattcctatgacaaacctaacatttgtgcctaatgacatgaccccaacaatatttgacaatcaatattaccgagacattatggatg |
543 |
Q |
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| T |
55384936 |
gcatgcccaactgttattcctatgacaaacctaacatttgtgcctaatgacatgaccccaacaatatttgacaatcaatattaccgagacattat-gatg |
55385034 |
T |
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| Q |
544 |
ggaagaggtttgcttggtattgactcgagcatttctagagatccacg |
590 |
Q |
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| T |
55385035 |
ggaagaggtttgcttggtattgactcgagcatttctagagatccacg |
55385081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 55384504 - 55384675
Alignment:
| Q |
5 |
acaactcccacgtgcagccaacattttttcctccctttttaccaagaattatgggtgtgacttgtgagaaatttcaaatatctgctctttctgttggtgg |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
55384504 |
acaattcccacgtgcagccaacattttttcctccctttttaccaagaattatgggtgtgacttgtgagaaatctcaaatatctgctctttttgttggtgg |
55384603 |
T |
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| Q |
105 |
ttgagaactattagcttcatataatccattttcgggatagaccacatgatatccagatatacaactcatgaa |
176 |
Q |
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| T |
55384604 |
ttgagaactattagcttcatataatccattttcgggatagacctcatgatatccagatatacaactcatgaa |
55384675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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