View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5084-Insertion-6 (Length: 525)
Name: NF5084-Insertion-6
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084-Insertion-6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 40892522 - 40892005
Alignment:
| Q |
8 |
ctttcatgtggtgcgagattaacattggaacttttctttcttatctgatgatcatgggactcataatcttgattgtttggttaacctttgtcaatacgct |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40892522 |
ctttcatgtggtgcgagattaacatgggaacttttctttcttatctgatgatcatgggactcataatcttgattgtttggttaacctttgtcagtacgct |
40892423 |
T |
|
| Q |
108 |
gttgatctaagttctggccatttagnnnnnnntgatatttattgttttgccacggatgatcttctccaatacattgctgataggtaatgccaaatttatt |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40892422 |
gttgatctaagttctggccatttagaaaaaaatgatatttattgttttgccaccgatgatcttctccaatacattgctggtaggtaatgccaaatttatt |
40892323 |
T |
|
| Q |
208 |
ttcatattctctccttttagtgttatatactttgttattatcattaatccatcggtaaatatttctttattggcaaaggggattgtgagaagcttcttca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40892322 |
ttcatattctctccttttagtgttatatactttgttattatcattaatcgataggtaaatatctctttattggcaaaggggattatgagaagcttcttca |
40892223 |
T |
|
| Q |
308 |
tcaatggaatggaaaccctatatgttttcaacgatgtttgtttctttgcaagttttaatatttatttttctgccacaatcttaaattggccaccatgtta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40892222 |
tcaatggaatggaaaccctatatgttttcaacgatgtttgtttctttgcaagttttaatatttatttttctgccacaatcttaaattggccaccatgtta |
40892123 |
T |
|
| Q |
408 |
acaaccgcttgtttcatggtatttcgtgttgcttaatgttgatttattttttagtttagttattggtactttgatatgcatttaggaatgctgtgcagtt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40892122 |
acaaccgcttgtttcatggtatttcgtgttgcttaatgttgatttattttttagtttagttattggtactttgatatgcatttaggaatgctgtgcagtt |
40892023 |
T |
|
| Q |
508 |
ggctccatttatttgttt |
525 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40892022 |
ggctccatttatttgttt |
40892005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 30624018 - 30623880
Alignment:
| Q |
82 |
gtttggttaacctttgtcaatacgctgttgatctaagttctggccatttagnnnnnnntgatatttattgttttgccacggatgatcttctccaatacat |
181 |
Q |
| |
|
||||||| || ||||||||||| |||||||| ||||||||||| ||||||| |||||| ||| | |||| || |||||||||||||||||||| |
|
|
| T |
30624018 |
gtttggtcaatctttgtcaatatgctgttgacctaagttctggtcatttagaaaagattgatatctatggatttggtactgatgatcttctccaatacat |
30623919 |
T |
|
| Q |
182 |
tgctgataggtaatgccaaatttattttcatattctctc |
220 |
Q |
| |
|
|||||||||||||| || | |||| |||| ||||||||| |
|
|
| T |
30623918 |
tgctgataggtaatacccattttactttcctattctctc |
30623880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 38284600 - 38284720
Alignment:
| Q |
73 |
atcttgattgtttggttaacctttgtcaatacgctgttgatctaagttctggccatttagnnnnnnntgatatttattgttttgccacggatgatcttct |
172 |
Q |
| |
|
||||||||| |||||| || ||||||||||| |||||||||||||||||||| ||||||| |||||||||| | |||| | ||| ||||||| |
|
|
| T |
38284600 |
atcttgattatttggtcaagctttgtcaatatgctgttgatctaagttctggtcatttagaaaaaattgatatttatagatttggttctgatcatcttct |
38284699 |
T |
|
| Q |
173 |
ccaatacattgctgataggta |
193 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38284700 |
ccaatacattgctgataggta |
38284720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University