View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084-Insertion-7 (Length: 524)
Name: NF5084-Insertion-7
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 109 - 420
Target Start/End: Original strand, 13919469 - 13919780
Alignment:
| Q |
109 |
ttatgtaacattttttgccaaaataacaactgtgatgtgttgttaaaaaagctgtgatgctgttggaagatctaaaatcattatgttagacaattagtaa |
208 |
Q |
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| T |
13919469 |
ttatgaaacattttttgccacaataacaactgtgatgtgttgttaaaaaagctgtgatgctgttggaagatctaaaatcattatgttagacaattagtaa |
13919568 |
T |
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| Q |
209 |
aatataaaccattatgaaaaacattaaacatgttaaatgtttttacaaatcgggactttgactgtttgtgacagcaaagcaggcatttttggtgtgaatg |
308 |
Q |
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| T |
13919569 |
aatataaaccattatgaaaaacattaaacatgttaaatgtttttacaaatcgggactttgactgtttgtgacagcaaagcaggcatttttggtgtgaatg |
13919668 |
T |
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| Q |
309 |
tattttaatccaagaaaggaattgcgtatacgtaattattagatagttgaaagttccaaacttgtatttttcgtttcattttttgaaaggaaggtgcaac |
408 |
Q |
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| T |
13919669 |
tattttaatccaagaaaggaattgcgtatacgtaattattagatagttgaaagttccaaacttgtatttttcgtttcattttttgaaaggaaggtgcaac |
13919768 |
T |
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| Q |
409 |
caaaatttgtaa |
420 |
Q |
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| T |
13919769 |
caaaatttgtaa |
13919780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 13919229 - 13919334
Alignment:
| Q |
8 |
gttctagatggtaattttgattaatgaaaaccatgattttaaattgatgtgcagatcttatataggaatgacaaaacaccagaaaatgtggtttatgcta |
107 |
Q |
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| T |
13919229 |
gttctagatggtaattttgattaatgaaaaccatgattttaaattgatgtgcagatcttatatcggaatgacaaaacaccagaaaatgtggtttatgcta |
13919328 |
T |
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| Q |
108 |
cttatg |
113 |
Q |
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| T |
13919329 |
cttatg |
13919334 |
T |
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