View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084-Insertion-8 (Length: 470)
Name: NF5084-Insertion-8
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 470
Target Start/End: Original strand, 12470269 - 12470731
Alignment:
| Q |
7 |
actatcatctcatacttgaagggaatgtaacatggatcaatagtcagatgtttggtgatacacaaaagtcctcgtttctgaggcgattgtagagcatact |
106 |
Q |
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| T |
12470269 |
actatcatttcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgagtgtagagcgtact |
12470368 |
T |
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| Q |
107 |
tgcatctccatagttgagattaataatatgaacatcataactagagtttttagacataaaagagaaatttaggacatgnnnnnnnnnacttaaacacaa- |
205 |
Q |
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| T |
12470369 |
tgcatctctatagttga-attaataatatgaacatcataactagagttttcagacataagagagaaatttaggatatgtttttttttacttaaacacaaa |
12470467 |
T |
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| Q |
206 |
gattttatttgatttgcttctgcttaatatgttacaacacttcnnnnnnnnaaagttgaggaggtacactaaaagatgaaaacaaaattattcatacaca |
305 |
Q |
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| T |
12470468 |
gattttatttgatttgcttctgcttaatatgttacaacacttcttctttt-atagctaaggaggtacactaaaagatgaaaacaaaattattcatacaca |
12470566 |
T |
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| Q |
306 |
tgtaattataaaacatcattgacatgctttacaattatgcaagacatgttcatgacacttttgactcacatgtcaaattattgacatattttaaattaaa |
405 |
Q |
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| T |
12470567 |
tgtcattataaaacatcattgacatgctttacaattatgcaagacatgttcatgacacttttgactcacatggcaaattattgacatattttaaattaaa |
12470666 |
T |
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| Q |
406 |
aaacgaaaatacgactattcatatacattacaattatgcaagacgtactttttgactaagatgtc |
470 |
Q |
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| T |
12470667 |
aaacgaaaatacaactattcatatacattacaattatgcaagacgtactttttgactaagatgtc |
12470731 |
T |
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Back To:
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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 12346170 - 12346089
Alignment:
| Q |
37 |
catggatcaatagtcagatgtttggtgatacacaaaagtcctcgtttctgaggcgattgtagagcatacttgcatctccatag |
119 |
Q |
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| T |
12346170 |
catggatcactagtcagatgttttctgatacacaaga-tcctcatttctgaggcgagtgtagagcatacttgcatctctatag |
12346089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 12366391 - 12366310
Alignment:
| Q |
37 |
catggatcaatagtcagatgtttggtgatacacaaaagtcctcgtttctgaggcgattgtagagcatacttgcatctccatag |
119 |
Q |
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| T |
12366391 |
catggatcactagtcagatgttttctgatacacaaga-tgctcatttctaaggcgagtgtagagcatacttgcatctctatag |
12366310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 387
Target Start/End: Complemental strand, 657924 - 657853
Alignment:
| Q |
316 |
aaacatcattgacatgctttacaattatgcaagacatgttcatgacacttttgactcacatgtcaaattatt |
387 |
Q |
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| T |
657924 |
aaacattattgaaaagctttacaattatggaagacatacttatgacacttttgactaacatgtcacattatt |
657853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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