View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084_high_2 (Length: 607)
Name: NF5084_high_2
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 154 - 590
Target Start/End: Original strand, 42004863 - 42005299
Alignment:
| Q |
154 |
caataaaaaatcaataaccatatcaaacacttactaccattaacttttgatatacagagcaaacgaaaagttgatggaaaatgcataacacatcactgga |
253 |
Q |
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| T |
42004863 |
caataaaaaatcaataaccatatcaaacacttactaccattaacttttgatatacagagaaaacgaaaagttgatggaaaatgcataacacatcactggt |
42004962 |
T |
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| Q |
254 |
tcagagtttagaaaaatcaaaagcttaaaagtaggataaattaaggatgcatnnnnnnnntaaagaaattaattaaagaaacaaaattggaactttttta |
353 |
Q |
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| T |
42004963 |
tcagagtttagaaaaatcaaaagcttaaaagtaagataaattaaggatgcataaaaaaaataaagaaattaattaaagaaacaaaattggaactttttta |
42005062 |
T |
|
| Q |
354 |
ttacgtgttgattgaaaatcataaaagaccaatgttacataagaataatcttttatggaacaatctctttatgctcaacaacaaatgatacttgaggtgt |
453 |
Q |
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| T |
42005063 |
ttacgtgttaattgaaaatcataaaagaccaatgttacataagaataatcttttatggaacaatctctttatgctcaacaacaaatgatacttgtggtgt |
42005162 |
T |
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| Q |
454 |
gggtggtggaggtgaatgaacatcctcaacttcatcacaataaccttccaatatataagattcttcattggtgaatccaagcgaagcaaccatattaggc |
553 |
Q |
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| T |
42005163 |
gggtggtggaggtgaatgaacatcctcaacttcatcacaataaccttccaatatataagattcttcattggtgaatccaagcgaagcaaccatattaggc |
42005262 |
T |
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| Q |
554 |
caacaatcatgtccaacaaccctaattgctttacaac |
590 |
Q |
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| T |
42005263 |
caacaatcatgtccaataaccctaattgctttacaac |
42005299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 42004239 - 42004368
Alignment:
| Q |
15 |
tcatgccatatatggttttattataaatatatttaagaaactacagtaaaaagccaaaaacatattgtttgttattcaacgttgaaattatgt---taca |
111 |
Q |
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| T |
42004239 |
tcatgtcatatatggttttattatgaatatatttaagaaacaacagtaaaaagccaaaaatatattgtttgttattcaacgttggaattatgttactaca |
42004338 |
T |
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| Q |
112 |
agtcaaacaattttgatcaatagaacaatta |
142 |
Q |
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| T |
42004339 |
agtcaaacaa-tttgatcaatagaacaatta |
42004368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 455 - 590
Target Start/End: Complemental strand, 18346435 - 18346300
Alignment:
| Q |
455 |
ggtggtggaggtgaatgaacatcctcaacttcatcacaataaccttccaatatataagattcttcattggtgaatccaagcgaagcaaccatattaggcc |
554 |
Q |
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| T |
18346435 |
ggtggtggtggtgaatgaacatcctcaacctgatcacaataaccttccaataaatcagtttcttcattagtgaatccaagtgatgcaacaacgttaggcc |
18346336 |
T |
|
| Q |
555 |
aacaatcatgtccaacaaccctaattgctttacaac |
590 |
Q |
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| T |
18346335 |
aacaatcatgtccaataaccctaattgctttgcaac |
18346300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 455 - 590
Target Start/End: Complemental strand, 18358264 - 18358129
Alignment:
| Q |
455 |
ggtggtggaggtgaatgaacatcctcaacttcatcacaataaccttccaatatataagattcttcattggtgaatccaagcgaagcaaccatattaggcc |
554 |
Q |
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|||| ||| |||||||||||||||||||| | ||||||||||||||| |||| || || ||||||||||||||||||||| || ||||| | ||||||| |
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| T |
18358264 |
ggtgatggtggtgaatgaacatcctcaacctgatcacaataaccttctaatacatcagtttcttcattggtgaatccaagtgatgcaacaacgttaggcc |
18358165 |
T |
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| Q |
555 |
aacaatcatgtccaacaaccctaattgctttacaac |
590 |
Q |
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| T |
18358164 |
aacaatcatgtccaataaccctaattgctttgcaac |
18358129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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