View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5084_high_4 (Length: 347)
Name: NF5084_high_4
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 33445981 - 33446291
Alignment:
| Q |
16 |
tcatgtagacttctctgtcatccaggctcaccatgagagagtatacacatctaatttgcagttagacttgggagaagttgaatcctgtgtttcagggccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33445981 |
tcatgtagacttctctgtcatccaggctcaccatgagagagtatacacatctaatttgcagttagacttgggagaagttgaatcctgtgtttcagggccc |
33446080 |
T |
|
| Q |
116 |
aaaaggtatgataaccaactaatagacatagtttaacgcctgtattcctttatattattgtactgtctctttcttgtctcgttacacttcaatactttct |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
33446081 |
aaaaggtatgataaccgactaatagacatagtttaacgcctgtattcctttatattattgtactgtctctttcttatcttgttacacttctatactttct |
33446180 |
T |
|
| Q |
216 |
gaaaggcctcatgatcgagttcctttgaaagacatgaaggcagattggcatgcttgtcttgaaaacaaagttggaatcaaggtgacctggactggagctt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33446181 |
gaaaggcctcatgatcgagttcctttgaaagacatgaaggcagattggcatgcttgtcttgaaaacaaagttggaatcaaggtgacctggactggagctt |
33446280 |
T |
|
| Q |
316 |
ataatgtgcta |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
33446281 |
ataatgtgcta |
33446291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 17040978 - 17040913
Alignment:
| Q |
225 |
catgatcgagttcctttgaaagacatgaaggcagattggcatgcttgtcttgaaaacaaagttgga |
290 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
17040978 |
catgaccgagtgcctttgaaagaaatgaaggctgactggcatgcttgtcttgataacaaagttgga |
17040913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 28307003 - 28306927
Alignment:
| Q |
222 |
cctcatgatcgagttcctttgaaagacatgaaggcagattggcatgcttgtcttgaaaacaaagttggaatcaaggt |
298 |
Q |
| |
|
||||||||||| || ||||||||||| |||||| | ||||||||| |||||||||| |||||||| ||| ||||||| |
|
|
| T |
28307003 |
cctcatgatcgggtgcctttgaaagaaatgaagtccgattggcattcttgtcttgataacaaagtgggattcaaggt |
28306927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 37235108 - 37235184
Alignment:
| Q |
222 |
cctcatgatcgagttcctttgaaagacatgaaggcagattggcatgcttgtcttgaaaacaaagttggaatcaaggt |
298 |
Q |
| |
|
||||||||||| || ||||||||||| |||||| | ||||||||| |||||||||| |||||||| ||| ||||||| |
|
|
| T |
37235108 |
cctcatgatcgggtgcctttgaaagaaatgaagtccgattggcattcttgtcttgataacaaagtgggattcaaggt |
37235184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University