View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5084_high_5 (Length: 341)

Name: NF5084_high_5
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5084_high_5
NF5084_high_5
[»] chr2 (4 HSPs)
chr2 (21-341)||(3220132-3220450)
chr2 (24-181)||(12504720-12504877)
chr2 (24-181)||(14681049-14681206)
chr2 (185-334)||(15985303-15985449)
[»] scaffold0014 (2 HSPs)
scaffold0014 (24-181)||(143719-143876)
scaffold0014 (24-181)||(173513-173670)
[»] chr8 (4 HSPs)
chr8 (24-181)||(44197897-44198054)
chr8 (24-176)||(20793444-20793596)
chr8 (24-181)||(23929097-23929254)
chr8 (184-316)||(23729278-23729406)
[»] chr7 (4 HSPs)
chr7 (24-181)||(48513564-48513721)
chr7 (24-181)||(48728006-48728163)
chr7 (24-181)||(3718358-3718514)
chr7 (24-148)||(42105178-42105302)
[»] chr6 (1 HSPs)
chr6 (24-181)||(29651774-29651931)
[»] chr5 (4 HSPs)
chr5 (24-181)||(36662526-36662683)
chr5 (24-181)||(36679095-36679252)
chr5 (43-181)||(23203962-23204100)
chr5 (21-130)||(43560199-43560307)
[»] chr3 (3 HSPs)
chr3 (24-181)||(38327823-38327980)
chr3 (24-181)||(55488644-55488801)
chr3 (24-181)||(46073352-46073507)
[»] chr1 (3 HSPs)
chr1 (24-181)||(52609142-52609299)
chr1 (28-176)||(52887707-52887855)
chr1 (21-176)||(29886958-29887112)
[»] scaffold1284 (1 HSPs)
scaffold1284 (21-130)||(143-251)
[»] scaffold0318 (1 HSPs)
scaffold0318 (43-181)||(19955-20093)
[»] chr4 (1 HSPs)
chr4 (42-136)||(56288686-56288780)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 21 - 341
Target Start/End: Complemental strand, 3220450 - 3220132
Alignment:
Q  21 cctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgtt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3220450 cctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgtttttgtttcgcgaagaacaccttcgacttgtt 3220351  T
Q  121 gcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagcttttaacaaatcacttgtcaatactgtgactgactgagctggc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  3220350 gcttccattgaaggtagttcatatcatcaagcttaacataaactactcgttt--agcttttaacaaatcacttgtcaatactgtgactgactgagctggc 3220253  T
Q  221 aatagtctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaagaccaaagcagaggagttatcaggttcatgatatgat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220252 aatagtctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaagaccaaagcagaggagttatcaggttcatgatatgat 3220153  T
Q  321 gcacatctacatcttacggtt 341  Q
    |||||||||||||||||||||    
T  3220152 gcacatctacatcttacggtt 3220132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 12504877 - 12504720
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  12504877 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 12504778  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  12504777 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 12504720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 14681049 - 14681206
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  14681049 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 14681148  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  14681149 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 14681206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 185 - 334
Target Start/End: Original strand, 15985303 - 15985449
Alignment:
Q  185 aaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgacctt-gattactacttaaaaa 283  Q
    ||||||||||||||||||||| ||||    ||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| || |    
T  15985303 aaatcacttgtcaatactgtggctga----gctggcaatcgtcacacttaggacaagacttgcttatttgagggatcaacctttgattactacttcaaga 15985398  T
Q  284 gaccaaagcagaggagttatcaggttcatgatatgatgcacatctacatct 334  Q
    |  |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  15985399 gttcaaatcagaggagttatcaggtgcatgatatgatgcacatctacatct 15985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 143876 - 143719
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    ||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  143876 gcttcgcacgctgcatctgtgagataaaccgatggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 143777  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  143776 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 143719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 173670 - 173513
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  173670 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 173571  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  173570 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 173513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 44198054 - 44197897
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  44198054 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 44197955  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  44197954 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 44197897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 20793596 - 20793444
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  20793596 gcttcgcgcgctgcatctgtgagataaacctgtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 20793497  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 176  Q
    ||||||||||||||||  ||||||||||||||||| |||||||| ||||||||    
T  20793496 tccattgaaggtagtttgtatcatcaagcttaacagaaactacttgtttgaag 20793444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 23929097 - 23929254
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||||||| | ||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||    
T  23929097 gcttcgcgcgctgcatctgtgagataaatcagtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcaacttgttgct 23929196  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  23929197 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 23929254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 23729406 - 23729278
Alignment:
Q  184 caaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaa 283  Q
    ||||||||||||||||||||||   | | ||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||| |||| |||  || |    
T  23729406 caaatcacttgtcaatactgtg---gtc-gagctggcaatagtcacacttaggacagaacttgcttatttgagagatcaacattggttaccactgtaaga 23729311  T
Q  284 gaccaaagcagaggagttatcaggttcatgata 316  Q
    |||||| ||| |||||| | ||||| |||||||    
T  23729310 gaccaaggcataggagtcaccaggtgcatgata 23729278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 48513564 - 48513721
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  48513564 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 48513663  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48513664 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48513721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 48728006 - 48728163
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |    
T  48728006 gctttgcgcgctgcatgtgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgtt 48728105  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48728106 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48728163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 3718358 - 3718514
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  3718358 gcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcg-agaacaccttcgacttgttgct 3718456  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    |||||| |||||||||  ||||||||||||| ||| |||||| | |||||||| ||||    
T  3718457 tccattaaaggtagtttgtatcatcaagcttgacagaaactagttgtttgaaggtttt 3718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 42105302 - 42105178
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | |||||||||||||| ||||||||||    
T  42105302 gcttcgcgcgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccacgaagaacaccttcaacttgttgct 42105203  T
Q  124 tccattgaaggtagttcatatcatc 148  Q
    ||||||||||||||||| |||||||    
T  42105202 tccattgaaggtagttcgtatcatc 42105178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 29651931 - 29651774
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  29651931 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 29651832  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  29651831 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 29651774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 36662683 - 36662526
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  36662683 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 36662584  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36662583 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36662526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 36679095 - 36679252
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  36679095 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 36679194  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36679195 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36679252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 23203962 - 23204100
Alignment:
Q  43 tgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcat 142  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  23203962 tgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgt 23204061  T
Q  143 atcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    || ||||||||||||| ||| |||| |||||||| ||||    
T  23204062 ataatcaagcttaacagaaagtacttgtttgaaggtttt 23204100  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 43560307 - 43560199
Alignment:
Q  21 cctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgtt 120  Q
    ||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||| |||||    
T  43560307 cctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-ttgtt 43560209  T
Q  121 gcttccattg 130  Q
    ||||||||||    
T  43560208 gcttccattg 43560199  T

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Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 38327823 - 38327980
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  38327823 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 38327922  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  38327923 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 38327980  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 55488801 - 55488644
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  55488801 gcttcgcgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 55488702  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||| | |||||||| |||||||| ||||    
T  55488701 tccattgaaggtagttcgtatcatcaagcttaatagaaactacttgtttgaaggtttt 55488644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 46073507 - 46073352
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| |||||||||||||||||  |||||||| |||||||||||||||||||| | | |||||| ||||||||||||||||||||||||| |    
T  46073507 gcttcgcgcgctgcatctgtgagataaacc--tggaatctcaggtgaaatcacaaatttcaacatcttcgttccgcgaagaacaccttcgacttgttgtt 46073410  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  46073409 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 46073352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 52609142 - 52609299
Alignment:
Q  24 gcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgct 123  Q
    |||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  52609142 gcttcgcgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgct 52609241  T
Q  124 tccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  52609242 tccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 52609299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 52887855 - 52887707
Alignment:
Q  28 cgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttcca 127  Q
    |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||    
T  52887855 cgcgcgctgcaactgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcattccgcgaagaacaccttcgacttgttgcttcca 52887756  T
Q  128 ttgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 176  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  52887755 ttgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag 52887707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 29887112 - 29886958
Alignment:
Q  21 cctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgtt 120  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  29887112 cctgcttcgcgcgctgcat-tgtgagataaaccggtggaatctcaggcgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgtt 29887014  T
Q  121 gcttccattgaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 176  Q
    | |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  29887013 gtttccattgaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag 29886958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 251 - 143
Alignment:
Q  21 cctgcttcgcgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgtt 120  Q
    ||||||||| | ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||| |||||    
T  251 cctgcttcgtgtgctgcatctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-ttgtt 153  T
Q  121 gcttccattg 130  Q
    ||||||||||    
T  152 gcttccattg 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 19955 - 20093
Alignment:
Q  43 tgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcat 142  Q
    ||||||||||||||||||| || || |||| || |||||||||| ||||  || | || |  |||||||| ||||| ||||||||||  ||||||||       
T  19955 tgagataaaccggtggaatttgtggagaaaccataaatttcaccatttttcttcctcgcaacacaccttctacttgctgcttccattagaggtagtttga 20054  T
Q  143 atcatcaagcttaacataaactactcgtttgaagctttt 181  Q
    ||||| |||||| ||| |||||||  |||||||| ||||    
T  20055 atcatgaagcttcacaaaaactacctgtttgaaggtttt 20093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 56288686 - 56288780
Alignment:
Q  42 gtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta 136  Q
    |||||||| |||||||||||||| || ||||  |||  ||||||| | |||||  |||| | ||| |||||||| ||||| ||||||||||||||    
T  56288686 gtgagatacaccggtggaatctgcggcgaaacgacatgtttcaccatcttcgtaccgcgcaaaactccttcgacctgttgtttccattgaaggta 56288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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