View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5084_high_7 (Length: 314)

Name: NF5084_high_7
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5084_high_7
NF5084_high_7
[»] chr3 (2 HSPs)
chr3 (118-299)||(55301406-55301587)
chr3 (11-63)||(55301299-55301351)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 55301406 - 55301587
Alignment:
Q  118 caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301406 caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt 55301505  T
Q  218 gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301506 gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtat 55301587  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 55301299 - 55301351
Alignment:
Q  11 cagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301299 cagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg 55301351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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