View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084_low_1 (Length: 640)
Name: NF5084_low_1
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 36136255 - 36136808
Alignment:
| Q |
1 |
ccaagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36136255 |
ccaagcataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcctaactcaacattgcaatacttctgtat |
36136354 |
T |
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| Q |
101 |
cagcaaatcttctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaaatgagaaagtggaccgacctattcttgttgcttctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
36136355 |
cagcaaatcttctcctatatacagtgaatctccaactcaacattacaatacttctgtctcaaa--gagaaagtggaccgacctattcttgttgtttctgt |
36136452 |
T |
|
| Q |
201 |
attcaattttctagggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccag |
300 |
Q |
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| T |
36136453 |
attcaattttctagggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccag |
36136552 |
T |
|
| Q |
301 |
tgtgccatatgacattgattcaattatatttgtaactaattatttttctttaacttttgatgcggatatcattataaatatataactgttgattataata |
400 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36136553 |
tgtgccatatgacattgattcagttatatttgtaactaactatttttctttaacttttgatgcggatatcattataaatatataactgttgattataata |
36136652 |
T |
|
| Q |
401 |
acttaataagtgtttttgcttgtgattggttctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgttaatgagcaggaa |
500 |
Q |
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| T |
36136653 |
acttaataagtgtttttgcttgtgattggttctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgttaatgagcaggaa |
36136752 |
T |
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| Q |
501 |
aattcagacaattctcgagatcagccctgatcatatccaattttattgggtaatgc |
556 |
Q |
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| T |
36136753 |
aattcagacaattctcgagatcagccctgatcatatccaattttattgggtaatgc |
36136808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 593 - 627
Target Start/End: Original strand, 36136845 - 36136879
Alignment:
| Q |
593 |
accactatagtgcttatttaacatacctttatatt |
627 |
Q |
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| T |
36136845 |
accactatagtgcttatttaacatacctttatatt |
36136879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 319 - 556
Target Start/End: Original strand, 41339447 - 41339677
Alignment:
| Q |
319 |
ttcaattatatttgtaactaattatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataacttaataagtgtttttg |
418 |
Q |
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| T |
41339447 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataa--------gtgcctttg |
41339538 |
T |
|
| Q |
419 |
cttgtgattggttctctaagagggtaaagaagaagcatcacatcaagttgaaggctcaagtagttctgttaatgagcaggaaaattcagacaattctcga |
518 |
Q |
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| T |
41339539 |
cttgtgcttggttctcttagagggtaaagaagaagcatcacgtcaagttgaaggctcaagtagttctgttaatgagcaagaaaattcggacaattctcca |
41339638 |
T |
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| Q |
519 |
gatcagccctgatcat-atccaattttattgggtaatgc |
556 |
Q |
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| T |
41339639 |
gatcaaccatgttcgtaatccaattttattgggtaatgc |
41339677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 41339373 - 41339449
Alignment:
| Q |
213 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttc |
289 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
41339373 |
agggaaaggttttccagccgtggtcgaaatcattgcagatggaaaaatgagcaaccaggtatctaaatggttatttc |
41339449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 41337773 - 41337843
Alignment:
| Q |
3 |
aagtataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
73 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
41337773 |
aagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
41337843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 217 - 397
Target Start/End: Original strand, 22629871 - 22630048
Alignment:
| Q |
217 |
aaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgtgccatatgacatt |
316 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| | |||| || |||| |||||||||||| | |||||||||||||| |||| ||||||||||| |
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| T |
22629871 |
aaaggttttccagccttggtcgaaatcattacagaag---aaattagaaaccgtgtatctatatggctctttctttgtggccaatgtgtcatatgacatt |
22629967 |
T |
|
| Q |
317 |
gattcaattatatttgtaactaattatttttctttaacttttgatgcggatatcattataaatatataactgttgattata |
397 |
Q |
| |
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|||||| ||| |||||||||||| | ||| ||| || |||| || |||||||||||||||||||||||| ||||||||| |
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| T |
22629968 |
gattcagttagatttgtaactaactttttcacttaaatttttcataaggatatcattataaatatataactattgattata |
22630048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 218 - 383
Target Start/End: Complemental strand, 22630255 - 22630092
Alignment:
| Q |
218 |
aaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttctttgtggccagtgtgccatatgacattg |
317 |
Q |
| |
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||||||||||||| ||||| ||||||||| ||| |||||||| | ||| |||||||||||| | ||||| ||||| |||| || |||||||||||| |
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| T |
22630255 |
aaggttttccagccatggtcgaaatcattagagat---aaaatgagaagccatgtatctatatggctctttctctgtggtcagtttgtcatatgacattg |
22630159 |
T |
|
| Q |
318 |
attcaattatatttgtaactaattatttttctttaac-ttttgatgcggatatcattataaatatat |
383 |
Q |
| |
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| ||| ||| |||||||||||| | ||| ||||| | |||||||| |||||||||||||||||||| |
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| T |
22630158 |
aatcatttagatttgtaactaaatttttcactttacctttttgatgaggatatcattataaatatat |
22630092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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