View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084_low_4 (Length: 460)
Name: NF5084_low_4
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 43903973 - 43903522
Alignment:
| Q |
1 |
cagtgtcaccggagctgaccgatgagagtcaaagaacaagagcattgttgtcgggtgacatattcataatgacaatgtataaaactaagggaaaacacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43903973 |
cagtgtcaccggagctgaccgatgagagtcaaagaacaagagcattgttgtcgggtgacatattcataatgacaatgtataaaactaagggaaaacacag |
43903874 |
T |
|
| Q |
101 |
aactgaagaacaattcaaacaacttggcatttctgctggttttcttcgttttcgtgccttccacattgatccttattttcctgttctagaatttcagaaa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43903873 |
aactgaagaacaattcaaacagcttggcatttctgctggttttcttcgttttcgtgccttccacattgatccttattttcctgttctagaatttcagaaa |
43903774 |
T |
|
| Q |
201 |
tgagcagaagaagcctttgaagtgtgcggtgtttgttatgtgattgggtaaatgttaaacatttcctgctgtaaatgtttttattggattatttggg-gg |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
43903773 |
tgagcagaagaagcctttgaagtgtgcggtgtttattatgtgatggggtaaatgttaaacatttgctgctgtaaatgtttttattggattatttgggtgg |
43903674 |
T |
|
| Q |
300 |
tggcagactcctttagattgtttgaatgttggttagatgnnnnnnnnnnnnnnnnncttattaatgaagtgttgtatttgaagtttgttggtctttcttg |
399 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||| |
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| T |
43903673 |
tggccgactcctttagattgtttggatgttggttagatgtttttgttttgttttttcttattgatgaagtgttgtatttgaattttgttggtcttccttg |
43903574 |
T |
|
| Q |
400 |
acacactttgtgttaagaagagcatcttttgtcgtttatatataagtattat |
451 |
Q |
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| T |
43903573 |
acacaccttgtgttaagaagagcatcttttgtcatttatatataagttttat |
43903522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 43893379 - 43893151
Alignment:
| Q |
3 |
gtgtcaccggagctgaccgatgagagtcaaagaacaagagcattgttgtcgggtgacatattcataatgacaatgtataaaactaagggaaaacacagaa |
102 |
Q |
| |
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|||| |||||||| ||||||||||||| |||||||||||||||||||| | | |||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
43893379 |
gtgttaccggagcagaccgatgagagtaaaagaacaagagcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaa |
43893280 |
T |
|
| Q |
103 |
ctgaagaacaattcaaacaacttggcatttctgctggttttcttcgttttcgtgccttccacattgatccttattttcctgttctagaatttcagaaatg |
202 |
Q |
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| T |
43893279 |
ctgaagaacaattcaaacaacttggcatttctgctggttttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatg |
43893180 |
T |
|
| Q |
203 |
agcagaagaagcctttgaagtgtgcggtg |
231 |
Q |
| |
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| T |
43893179 |
agcagaagaaggctttgaagtgtgtggtg |
43893151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 446
Target Start/End: Original strand, 13948810 - 13948898
Alignment:
| Q |
357 |
ttattaatgaagtgttgtatttgaagtttgttggtctttcttgacacactttgtgttaagaagagcatcttttgtcgtttatatataagt |
446 |
Q |
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||||| ||||||||||||||||||| |||||| |||| ||| ||||| ||||||| ||| ||||||||||| ||||||| |||||||| |
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| T |
13948810 |
ttattgatgaagtgttgtatttgaactttgttactcttccttaacacaacttgtgttgagaggagcatcttttatcgttta-atataagt |
13948898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 451
Target Start/End: Complemental strand, 12700577 - 12700491
Alignment:
| Q |
364 |
tgaagtgttgtatttgaagtttgttggtctttcttgacacactttgtgttaagaagagcatcttttgtcgtttatatataagtattat |
451 |
Q |
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|||||||||||||||||| ||||||| ||| |||| ||||| | || | ||||||||||||||||||||||| |||||||| |||| |
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| T |
12700577 |
tgaagtgttgtatttgaactttgttgcccttccttggcacaccatatgctgagaagagcatcttttgtcgttta-atataagttttat |
12700491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 446
Target Start/End: Complemental strand, 7125737 - 7125656
Alignment:
| Q |
364 |
tgaagtgttgtatttgaagtttgttggtctttcttgacacactttgtgttaagaagagcatcttttgtcgtttatatataagt |
446 |
Q |
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|||||||||||||||||| |||| || | || |||| ||||| ||||| | ||| ||||||||||| ||||||| |||||||| |
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| T |
7125737 |
tgaagtgttgtatttgaactttgatgcttttccttggcacaccttgtgctgagaggagcatcttttatcgttta-atataagt |
7125656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 56230031 - 56230107
Alignment:
| Q |
371 |
ttgtatttgaagtttgttggtctttcttgacaca--ctttgtgttaagaagagcatcttttgtcgtttatatataagt |
446 |
Q |
| |
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|||||||| || ||||||| |||| ||||||||| ||||||||||||| | ||||||||||| ||||| |||||||| |
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| T |
56230031 |
ttgtatttaaactttgttgatcttccttgacacatactttgtgttaagaggcgcatcttttgttgttta-atataagt |
56230107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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