View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084_low_7 (Length: 331)
Name: NF5084_low_7
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 15788776 - 15788472
Alignment:
| Q |
18 |
atactcataaacaagtgcgtttttatcacggtgaaggcagaatccataaactttgactatattgatatgatgaattcttgcaattgtgctaacatcttct |
117 |
Q |
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| T |
15788776 |
atactcataaacaagtgcatttttatcacggtgaaggcagaagccataaactttgattatattggtatgatgaattcttgcaattgtgctaacatcttct |
15788677 |
T |
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| Q |
118 |
atgaattgttcttccattcccatttcaaaacagtgaaaatctttgactgcaactttttctccatttgataattctcctttgaagtcagttccagaagcac |
217 |
Q |
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| T |
15788676 |
atgaattgttcttccattcccattataaaacagttgaaatctttgactgcaactttttgtccatttgataattctcctttgaagtcagttccagaagcac |
15788577 |
T |
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| Q |
218 |
tagaacctaacatagctttgtgttgtctcatcttaccaaaagaaaaagaagtgtagttgcacttgtttgtaatttcatcaagttgttctggtgtgaatct |
317 |
Q |
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| T |
15788576 |
tagaacctaacatggttttgtgttgtctcatcttaccaaaagaaaaagaagtgtagttgcacttgtttgtaatttcatcaagttgttctggtgtgaatct |
15788477 |
T |
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| Q |
318 |
cattg |
322 |
Q |
| |
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||||| |
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| T |
15788476 |
cattg |
15788472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 15792973 - 15792768
Alignment:
| Q |
22 |
tcataaacaagtgcgtttttatcacggtgaaggcagaatccataaactttgactatattgatatgatgaattcttgcaattgtgctaacatcttctatga |
121 |
Q |
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| T |
15792973 |
tcataaacaagtgctcgtttatcacggtgaaagcagaagccataaagtttgactaaattgatatgataagttcttccaattgtgataacttctgctttga |
15792874 |
T |
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| Q |
122 |
attgttcttccattcccatttcaaaacagtgaaaatctttgactgcaactttttctccatttgataattctcctttgaagtcagttccagaagcactaga |
221 |
Q |
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|||| |||||||||||||| || ||||||| | | |||| |||||||| |||||||||||||||||||||||||||||| || ||| |||||| ||| |
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| T |
15792873 |
attgctcttccattcccatatccaaacagttgagaactttcactgcaacattttctccatttgataattctcctttgaagacaacgccaaaagcaccaga |
15792774 |
T |
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| Q |
222 |
acctaa |
227 |
Q |
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|||||| |
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| T |
15792773 |
acctaa |
15792768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 15779140 - 15779349
Alignment:
| Q |
18 |
atactcataaacaagtgcgtttttatcacggtgaaggcagaatccataaactttgactatattgatatgatgaattcttgcaattgtgctaacatcttct |
117 |
Q |
| |
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|||||||||||||||||| | | ||| ||| || |||||||||||||| |||||||| ||||||||| | | ||||| |||| |||||||| ||| || |
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| T |
15779140 |
atactcataaacaagtgctctcgtgtcatggtcaaagcagaatccataaagtttgactaaattgatatggtaagttcttccaatagtgctaacttctgct |
15779239 |
T |
|
| Q |
118 |
atgaattgttcttccattcccatttcaaaacagtgaaaatctttgactgcaactttttctccatttgataattctcctttgaagtcagttccagaagcac |
217 |
Q |
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||||||| |||||||||||||| || ||||||| | | |||| |||||||| ||||||||||||| |||||||||||| ||| || |||| |||||| |
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| T |
15779240 |
ttgaattgctcttccattcccatatccaaacagttgagaacttttactgcaacattttctccatttggtaattctcctttaaagacaactccaaaagcac |
15779339 |
T |
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| Q |
218 |
tagaacctaa |
227 |
Q |
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||||||||| |
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| T |
15779340 |
cagaacctaa |
15779349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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