View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5084_low_9 (Length: 274)
Name: NF5084_low_9
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 47100628 - 47100874
Alignment:
| Q |
10 |
atgaatctacaattacaattacagcttaaaagagatttttaaaaaattaataaatacgttatacttatacaatatggtagaaatgatggaaacccaccca |
109 |
Q |
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| T |
47100628 |
atgaatctacaattacaattacagcttaaaagagatttttaaaaaattaataaatacgttatacttatacaatatggtagaaatgatggaaacccaccca |
47100727 |
T |
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| Q |
110 |
ttacatgtagacttatagtctacaaacttannnnnnnctcccaaataatgaccttgataaaagagagattaaattaattaacacgtgaatactatatatt |
209 |
Q |
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| T |
47100728 |
ttacatgtagacttatagtctacaaacttatttttttctcccaaataatgaacttgataaaagagagattaaattaattaacacgtgaatactatataat |
47100827 |
T |
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| Q |
210 |
atagagatcaataagtaacgactattttaaagaaaaaagctgttatc |
256 |
Q |
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| T |
47100828 |
atagagatcaataagtaacgactattttaaagaaaaaagctgttatc |
47100874 |
T |
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