View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5085-Insertion-4 (Length: 560)
Name: NF5085-Insertion-4
Description: NF5085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5085-Insertion-4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 7 - 559
Target Start/End: Original strand, 12470269 - 12470821
Alignment:
| Q |
7 |
actatcatctcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgattgtagagcatact |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
12470269 |
actatcatttcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgagtgtagagcgtact |
12470368 |
T |
|
| Q |
107 |
tgcatctccatagttgaattaataatatgaacatcataactagagtttttagacataaaagagaaatttaggacatgnnnnnnnnnacttaaacacaa-g |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||| | |
|
|
| T |
12470369 |
tgcatctctatagttgaattaataatatgaacatcataactagagttttcagacataagagagaaatttaggatatgtttttttttacttaaacacaaag |
12470468 |
T |
|
| Q |
206 |
attttatttgatttgcttctgcttaatatgttacaacacttcnnnnnnnnaaagttgaggaggtacactaaaagatgaaaacaaaattattcatacacat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12470469 |
attttatttgatttgcttctgcttaatatgttacaacacttcttctttt-atagctaaggaggtacactaaaagatgaaaacaaaattattcatacacat |
12470567 |
T |
|
| Q |
306 |
gtcattataaaacatcattgacatgctttacaattatgcaagacatgttcatgacacttttgactcacatgtcaaattattgacatattttaaattaaaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12470568 |
gtcattataaaacatcattgacatgctttacaattatgcaagacatgttcatgacacttttgactcacatggcaaattattgacatattttaaattaaaa |
12470667 |
T |
|
| Q |
406 |
aacgaaaatacaactattcatatacattacaattatgcaagacgtactttttgactaagatgtcacattatcggtccctaatccgaatggtttaactcaa |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12470668 |
aacgaaaatacaactattcatatacattacaattatgcaagacgtactttttgactaagatgtcacattatcggtccctaatccgaacagtttaactcaa |
12470767 |
T |
|
| Q |
506 |
aatttatttgataatggtcttaaataataaaagcctatgtgtaaagctaaaacc |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12470768 |
aatttatttgataatggtcttaaataataaaagcctatgtgtaaagctaaaacc |
12470821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 12346195 - 12346089
Alignment:
| Q |
12 |
catctcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgattgtagagcatacttgcat |
111 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
12346195 |
catctcataatagagaggaccatagcatggatcactagtcagatgttttctgatacacaaga-tcctcatttctgaggcgagtgtagagcatacttgcat |
12346097 |
T |
|
| Q |
112 |
ctccatag |
119 |
Q |
| |
|
||| |||| |
|
|
| T |
12346096 |
ctctatag |
12346089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 12366416 - 12366310
Alignment:
| Q |
12 |
catctcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgattgtagagcatacttgcat |
111 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||| | | ||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
12366416 |
catctcataataaagaggaccgtagcatggatcactagtcagatgttttctgatacacaaga-tgctcatttctaaggcgagtgtagagcatacttgcat |
12366318 |
T |
|
| Q |
112 |
ctccatag |
119 |
Q |
| |
|
||| |||| |
|
|
| T |
12366317 |
ctctatag |
12366310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 657938 - 657853
Alignment:
| Q |
300 |
acacatgtcattataaaacatcattgacatgctttacaattatgcaagacatgttcatgacacttttgactcacatgtcaaattatt |
386 |
Q |
| |
|
|||||||||| |||||| ||| ||||| | |||||||||||||| ||||||| | ||||||||||||||| |||||||| |||||| |
|
|
| T |
657938 |
acacatgtcactataaa-cattattgaaaagctttacaattatggaagacatacttatgacacttttgactaacatgtcacattatt |
657853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 36681081 - 36680939
Alignment:
| Q |
11 |
tcatctcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgattgtagagcat---actt |
107 |
Q |
| |
|
||||||| ||| ||||| ||| ||||||||||||||||||| || |||| |||||||||| | ||| | ||| |||||||| | |||||||| ||| |
|
|
| T |
36681081 |
tcatctcgtaaaagagaagaacataacatggatcaatagtcaaatattttatgatacacaaga-tccgcatttatgaggcgagtatagagcatcaagctt |
36680983 |
T |
|
| Q |
108 |
gcatctccatagttgaattaataatatgaacatcataactagag |
151 |
Q |
| |
|
||||||| |||| ||||||| | |||||||| |||||||||| |
|
|
| T |
36680982 |
gcatctctatagaggaattaaagacatgaacataataactagag |
36680939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 18635776 - 18635877
Alignment:
| Q |
12 |
catctcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgattgtagagcatacttgcat |
111 |
Q |
| |
|
|||| ||||||| |||||| ||| |||||| |||||||||||||||||||||| ||| | ||||| |||| |||| || ||||||| ||||| |||| |
|
|
| T |
18635776 |
catcccataatatagaggatcgtagtatggatatatagtcagatgttttctgatacgcaaga-tcctcatttcagaggtgagtgtagagaatactagcat |
18635874 |
T |
|
| Q |
112 |
ctc |
114 |
Q |
| |
|
||| |
|
|
| T |
18635875 |
ctc |
18635877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 49758867 - 49758822
Alignment:
| Q |
268 |
gtacactaaaagatgaaaacaaaattattcatacacatgtcattat |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
49758867 |
gtacactaaaagatgaaaacataattattcatgttcatgtcattat |
49758822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 6314624 - 6314488
Alignment:
| Q |
12 |
catctcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcctcgtttctgaggcgattgtagagcatacttgcat |
111 |
Q |
| |
|
|||||| |||||||||||| |||||| ||| |||||||| ||||||| | ||| |||| | || || ||||| ||| || || || |||||||| ||| |
|
|
| T |
6314624 |
catctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatatacaaga-tcgtcatttctaaggtgagtggagcgcatacttacat |
6314526 |
T |
|
| Q |
112 |
ctccatagttgaattaataatatgaacatcataactag |
149 |
Q |
| |
|
||| |||| ||||||| |||||||||| |||||||| |
|
|
| T |
6314525 |
ctctatagagaaattaatgatatgaacataataactag |
6314488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University