View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5085_low_1 (Length: 366)
Name: NF5085_low_1
Description: NF5085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5085_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 42956729 - 42956380
Alignment:
| Q |
18 |
cttgtggcagatgccctctctgcccgatatgccacatagcgaattaggggacattatgtcccaatgtaaacgtcacttgattaataatcgaaattatgtg |
117 |
Q |
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| T |
42956729 |
cttgtggcagatgccctctctgcccgatatgccacatagcgaattaggggacattatgtcccaatgtaaacgtcacttgattaataatcgaaattatgtg |
42956630 |
T |
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| Q |
118 |
gtgccatttcatttcaccctagccccatattttttctaatgtaatatttaactatgaatgaaatgaactagttttgtctttgtt-nnnnnnnnnnngtag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42956629 |
gtgccatttcatttcaccctagccccatattttttctaatgtactatttaactatgaatgaaatgaactagttttgtctttgttaaaaaaaaaaaagtag |
42956530 |
T |
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| Q |
217 |
gatgtgtactatatacaatacacttttcttgtgttgttgctttcaaacgaagcagtgattaacatcagtaaaaaatcactcacataatctctttaattat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42956529 |
gatgtgtactatatacaatacacttttcttgtgttgttgctttcaaacgaagcagtgattaacatcagtaaaaaatcacacacataatctctttaattat |
42956430 |
T |
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| Q |
317 |
gaaaggaaaaaataagtttggttaaagcaactagcattttcatgattttt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42956429 |
gaaaggaaaaaataagtttggttaaagcaactagcattttcatgattttt |
42956380 |
T |
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