View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5085_low_3 (Length: 323)
Name: NF5085_low_3
Description: NF5085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5085_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 49254959 - 49254651
Alignment:
| Q |
18 |
ccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatatt |
117 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49254959 |
ccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatatt |
49254860 |
T |
|
| Q |
118 |
gtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaac---caccctc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
49254859 |
gtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagcaccctc |
49254760 |
T |
|
| Q |
215 |
tgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgttggtgga |
301 |
Q |
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| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
49254759 |
tctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgttggtgga |
49254661 |
T |
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| Q |
302 |
agttgagatt |
311 |
Q |
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|||||||||| |
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| T |
49254660 |
agttgagatt |
49254651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 49267221 - 49266985
Alignment:
| Q |
18 |
ccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatatt |
117 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
49267221 |
ccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaaaatatt |
49267122 |
T |
|
| Q |
118 |
gtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccaccctctgt |
217 |
Q |
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|||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| | |
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| T |
49267121 |
gtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcaccttctct |
49267022 |
T |
|
| Q |
218 |
gtctttctctaacaaacctttatccatattttctagc |
254 |
Q |
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|||||||||||||||||| || ||||||||||||||| |
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| T |
49267021 |
gtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 49271627 - 49271447
Alignment:
| Q |
18 |
ccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatatt |
117 |
Q |
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||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271627 |
ccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatatt |
49271528 |
T |
|
| Q |
118 |
gtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
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| T |
49271527 |
gtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 49274613 - 49274761
Alignment:
| Q |
18 |
ccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaa |
113 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49274613 |
ccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaa |
49274712 |
T |
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| Q |
114 |
tattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
162 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
49274713 |
tattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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