View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5085_low_4 (Length: 252)

Name: NF5085_low_4

Description: NF5085

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5085_low_4

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 124; E-Value: 7e-64

Query Start/End: Original strand, 125 - 252

Target Start/End: Original strand, 42956093 - 42956220

Alignment:

Q	125	ctgaaacacaatgaattaagatagtgatagcctaaagtgttcacaacttttgagaattcaactctcgcaggtatctagatttaccggtcaagcaatgcaa	224	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42956093	ctgaaacacaatgaattaagatagtgatagcctaaagtgttcacaacttttgagaattcaactctcgcaggtatctagatttaccggtcaagcaatgcaa	42956192	T

Q	225	aaaattggatctaggaaccaccttggtt	252	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42956193	aaaattggatctgggaaccaccttggtt	42956220	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2

Raw Score: 75; E-Value: 1e-34

Query Start/End: Original strand, 12 - 98

Target Start/End: Original strand, 42956009 - 42956095

Alignment:

Q	12	atgaacaaagatgttatcgcaacagcttttataaaaaacataagcaaaaactaacttggtaaattgtaaacacaattaatgatcctg	98	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	42956009	atgaacaaagatgttatcgcaacagcttttataaaaaacataggcaaaatctaacttggtaaattgtaaacacaattagtgatcctg	42956095	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]