View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5085_low_6 (Length: 231)
Name: NF5085_low_6
Description: NF5085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5085_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 49254866 - 49254651
Alignment:
| Q |
19 |
aaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaac--- |
115 |
Q |
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| T |
49254866 |
aaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccag |
49254767 |
T |
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| Q |
116 |
caccctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgt |
202 |
Q |
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| T |
49254766 |
caccctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgt |
49254668 |
T |
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| Q |
203 |
tggtggaagttgagatt |
219 |
Q |
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| T |
49254667 |
tggtggaagttgagatt |
49254651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 49267104 - 49266985
Alignment:
| Q |
43 |
atcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccaccctctgtgtctttctctaacaaac |
142 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
49267104 |
atcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcaccttctctgtctttctctaacaaac |
49267005 |
T |
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| Q |
143 |
ctttatccatattttctagc |
162 |
Q |
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| T |
49267004 |
ccttttccatattttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 49271534 - 49271447
Alignment:
| Q |
19 |
aaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
106 |
Q |
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| T |
49271534 |
aaatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 49274710 - 49274761
Alignment:
| Q |
19 |
aaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
70 |
Q |
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| T |
49274710 |
aaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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