View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086-Insertion-2 (Length: 1200)
Name: NF5086-Insertion-2
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 5e-84
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 19293328 - 19293162
Alignment:
| Q |
8 |
actactatattgttgagtgaatagttgataaaagagttgaggcaccacattccaaacaatagtttatggtactaaagagcaaggaaacaaaacaggcaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19293328 |
actactatattgttgagtgaatagttgataaaagagttgaggcaccacatttcaaacaatagtttatggtactaaagagcaaggaaacaaaacaggcaaa |
19293229 |
T |
|
| Q |
108 |
gactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctctgaaaaatg |
174 |
Q |
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| T |
19293228 |
gactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctcttaaaaatg |
19293162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 19293012 - 19292943
Alignment:
| Q |
177 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19293012 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
19292943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 5e-84; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 5e-84
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 54787294 - 54787128
Alignment:
| Q |
8 |
actactatattgttgagtgaatagttgataaaagagttgaggcaccacattccaaacaatagtttatggtactaaagagcaaggaaacaaaacaggcaaa |
107 |
Q |
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| T |
54787294 |
actactatattgttgagtgaatagttgataaaagagttgaggcaccacatttcaaacaatagtttatggtactaaagagcaaggaaacaaaacaggcaaa |
54787195 |
T |
|
| Q |
108 |
gactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctctgaaaaatg |
174 |
Q |
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| T |
54787194 |
gactatatgcgttggaaagtagcagataatgtaattataaatgaagatggagactctcttaaaaatg |
54787128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 54786744 - 54786611
Alignment:
| Q |
248 |
gttcaaataagaatacttaccaaccatagtagtcatttcatttcacatagaccaaaggtatttttggcaaactaaacattttgaaaataagatgcaagca |
347 |
Q |
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| T |
54786744 |
gttcaaataagaatacttaccaaccatagtagtcatttcatttcacatagaccaaaggtatttttggcaaactaaacattttgaaaataagatgcaagca |
54786645 |
T |
|
| Q |
348 |
tcccaatgctcactgccatttctcttactacggt |
381 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
54786644 |
tcccaacgctcactgccatttctcttactacggt |
54786611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 740 - 853
Target Start/End: Complemental strand, 54786421 - 54786308
Alignment:
| Q |
740 |
ataatttttctgaatcttcttgtggctttaggatctaattatcctccatctttagggatttttggtattactctaaaacaaaatacctgtcccgatcctc |
839 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54786421 |
ataatttttctaaatcttcttgtggttttaggatctaattatcctccatctttagggatttttggtattactctaaaacaaaatacctgtcccgatcctc |
54786322 |
T |
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| Q |
840 |
aaatcaagtaacat |
853 |
Q |
| |
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|||||||| ||||| |
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| T |
54786321 |
aaatcaagcaacat |
54786308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 627 - 738
Target Start/End: Complemental strand, 54786613 - 54786502
Alignment:
| Q |
627 |
ggtacaatatattgtatcgttaagaaccaacataataataaaggaagtgtaccaaatcaattacgttataatattctattataaatcacatctcattgat |
726 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54786613 |
ggtacaatatattgtatcgttaagaaccaacataataataaagtaagtgtaccaaatcaattacgttataatattctattataaatcacatctcattaat |
54786514 |
T |
|
| Q |
727 |
catgatcggtta |
738 |
Q |
| |
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|||| ||||||| |
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| T |
54786513 |
catggtcggtta |
54786502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 54786978 - 54786909
Alignment:
| Q |
177 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54786978 |
accaagttattttgaaatgtcaatgaaataatttgctagcggttaacacttaccaataactttggaaata |
54786909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 903 - 1033
Target Start/End: Complemental strand, 54786280 - 54786145
Alignment:
| Q |
903 |
ttgtttgattaaaaccagttttagaa-aaaatattcatcttctcgtatcataattg-tccttac-aaaaagtttttataagcaaaacattttat-gatg- |
997 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||| |||| ||||||||||||| |||| |
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| T |
54786280 |
ttgtttgattaaaaccagttttagaaaaaaatattcatcttctcgtatcatagttgttccttacaaaaaagttttaataaacaaaacattttatggatga |
54786181 |
T |
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| Q |
998 |
atgacaccatggcagaaat-aaatcaaacactgaaat |
1033 |
Q |
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|||||| |||||||||||| ||||||||||| ||||| |
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| T |
54786180 |
atgaca-catggcagaaataaaatcaaacaccgaaat |
54786145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 42419401 - 42419452
Alignment:
| Q |
329 |
tgaaaataagatgcaagcatcccaatgctcactgccatttctcttactacgg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42419401 |
tgaaaataagatgcaagcatcccaatgctcactgccatttctcttactacgg |
42419452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 450 - 509
Target Start/End: Complemental strand, 2620992 - 2620935
Alignment:
| Q |
450 |
tatgttattctgttaagtcattaaagaataataaaaaagggatacgtgcgggctagcccg |
509 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2620992 |
tatgttattcttttaagtcattaaagaataataaaaaa--aatacgtgcgggctagcccg |
2620935 |
T |
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