View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086-Insertion-3 (Length: 747)

Name: NF5086-Insertion-3
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086-Insertion-3
NF5086-Insertion-3
[»] chr4 (7 HSPs)
chr4 (367-746)||(21386813-21387190)
chr4 (77-321)||(21386555-21386799)
chr4 (439-620)||(41231454-41231642)
chr4 (8-85)||(21371034-21371111)
chr4 (8-85)||(21386446-21386523)
chr4 (77-180)||(21370901-21371002)
chr4 (439-477)||(33283655-33283694)
[»] chr1 (3 HSPs)
chr1 (455-629)||(33383527-33383703)
chr1 (456-531)||(38544446-38544522)
chr1 (699-742)||(27905506-27905549)
[»] chr6 (3 HSPs)
chr6 (439-514)||(20500245-20500321)
chr6 (455-557)||(32150325-32150428)
chr6 (456-530)||(33968327-33968402)
[»] chr7 (6 HSPs)
chr7 (439-729)||(26385869-26386144)
chr7 (439-474)||(2331795-2331830)
chr7 (439-474)||(2339328-2339363)
chr7 (434-481)||(33719292-33719339)
chr7 (476-530)||(28534240-28534294)
chr7 (446-527)||(40292728-40292810)
[»] chr2 (6 HSPs)
chr2 (595-689)||(30966986-30967077)
chr2 (455-530)||(20572349-20572425)
chr2 (488-601)||(30598841-30598954)
chr2 (439-493)||(4472256-4472312)
chr2 (439-530)||(16952056-16952149)
chr2 (439-530)||(17022721-17022814)
[»] chr5 (1 HSPs)
chr5 (446-530)||(17853752-17853837)
[»] scaffold1613 (1 HSPs)
scaffold1613 (456-531)||(725-801)
[»] chr8 (3 HSPs)
chr8 (439-530)||(1760924-1761016)
chr8 (447-530)||(25184841-25184925)
chr8 (471-526)||(15906989-15907044)
[»] chr3 (3 HSPs)
chr3 (447-527)||(823117-823199)
chr3 (488-531)||(16266029-16266072)
chr3 (456-530)||(45354638-45354713)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 367 - 746
Target Start/End: Original strand, 21386813 - 21387190
Alignment:
Q  367 atataaatcttgatacatactttgagtttgaatataaattcaacnnnnnnnnnctagggcataaggagctgaatatagacggaacatccaaaataaacac 466  Q
    ||||||||||||||||||| |||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  21386813 atataaatcttgatacata-tttgagtttgaatataaattcaa-aaaaaaaaactagggcataaggagctgaatatagacggaacatccaaaataaacac 21386910  T
Q  467 cataaaaacactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaacatgatcaaataaacttcacctcctaaatcatactcca 566  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||||||||    
T  21386911 cataaaaacactcatacacacaacaccaaacaaaaccctaccttcaacgcccatgaggacaacaccaccaaataaagttcacctcctaaatcatactcca 21387010  T
Q  567 ccgcgaaccaccattgaacatgatatccataaccacccatcgctactactcacccccaaaaaatataccccttgaaatcaaaacaccttggtcgcatcac 666  Q
    ||||||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||    
T  21387011 ccgcgaaccaccgctgaatatgatatccataaccacccatcgccactactcacccccaaaaaacacacccctttaaatcaaaacaccctggtcgcatcac 21387110  T
Q  667 catagctgagccacacccaaaaagggcccattctaatactcatacagcttccaccacctctcaacctttggtccactgaa 746  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||| |||||||||  |||||||||||    
T  21387111 catagctgagccacacccaaaaagggcacattctaatattcatacaacttccatcacatctcaacctccggtccactgaa 21387190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 77 - 321
Target Start/End: Original strand, 21386555 - 21386799
Alignment:
Q  77 taattaacagggaaataactcatggtatatcccaaaggttcatatataggtgacatcatccactgtagagattcttaatcataattgaatatactgaaat 176  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21386555 taataaacagtgaaagaactcatggtatatcccaaaggttcatatgtaggtgacatcatccactgtagagattcttaatcataattgaatatactgaaat 21386654  T
Q  177 aatatttatatgtacgattgttcaatgcctctaattgtaattaaccatcgaacttatattattttgtgttattcacggaactaaatatcgtcttacaaat 276  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21386655 aatacttatatgtacgattgttcaatgcctctaattgtaattaaccatcgaacttatattattttgtgttattcacggaactaaatatcgtcttacaaat 21386754  T
Q  277 gtacaagtgtgtgtctgcacctatctcttatcctcttatatcata 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21386755 gtacaagtgtgtgtctgcacctatctcttatcctcttatatcata 21386799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 439 - 620
Target Start/End: Original strand, 41231454 - 41231642
Alignment:
Q  439 atatagacggaacatccaaaataaacaccataaaaacactca--------tacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    ||||||||||||||||||||||||||||||||||||||| ||        ||||| ||||||| |||||| ||||||||| ||| |||||||||||||||    
T  41231454 atatagacggaacatccaaaataaacaccataaaaacacccacacacccatacacccaacacctaaccaagccctacctttaacacccatgaggacaaca 41231553  T
Q  531 tgatcaaataaacttcacctcctaaatcatactccaccgcgaaccaccattgaacatgatatccataaccacccatcgctactactcacc 620  Q
      | ||||||| |||||||||||||| || |||||| ||| ||| |||| | || ||||| |||||||||||||||||| ||||||||||    
T  41231554 ccaccaaataatcttcacctcctaaaacagactccatcgcaaactaccactaaaaatgat-tccataaccacccatcgccactactcacc 41231642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 21371111 - 21371034
Alignment:
Q  8 ttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaactaattaatcttgattaattaaca 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21371111 ttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaagtaattaatcttgattaattaaca 21371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 21386446 - 21386523
Alignment:
Q  8 ttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaactaattaatcttgattaattaaca 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21386446 ttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaagtaattaatcttgattaattaaca 21386523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 21371002 - 21370901
Alignment:
Q  77 taattaacagggaaataactcatggtatatcccaaaggttcatatataggtgacatcatccactgtagagattcttaatcataattgaatatactgaaat 176  Q
    |||| ||||| |||| ||||||||||||||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21371002 taatgaacagtgaaagaactcatggtatatcccaaaggttcatgtgt--gtgacatcatccactgtagagattcttaatcataattgaatatactgaaat 21370905  T
Q  177 aata 180  Q
    ||||    
T  21370904 aata 21370901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 477
Target Start/End: Original strand, 33283655 - 33283694
Alignment:
Q  439 atatagacggaacatccaaaataaacacc-ataaaaacac 477  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  33283655 atatagacggaacatccaaaataaacaccgataaaaacac 33283694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 629
Target Start/End: Original strand, 33383527 - 33383703
Alignment:
Q  455 caaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaacatgatc--aaataaacttcacctc 551  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| | || | |||||| ||||||| |||||||    |  |||||||  ||||| |    
T  33383527 caaaataaacaccataaaagacactcatacacacaacacctaaccaagctctgctttcaacacccatgacgacaacaaccaccaaaataaatctcaccac 33383626  T
Q  552 ctaaatcatactccaccgcgaaccaccattgaacatgatatccataaccacccatcgctactactcacccccaaaaaa 629  Q
      |||||| ||||   ||| ||||||||||| | | || ||||||||||||||||||| |||||||||||| ||||||    
T  33383627 taaaatcagactctttcgcaaaccaccattggaaacga-atccataaccacccatcgccactactcaccccaaaaaaa 33383703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 531
Target Start/End: Original strand, 38544446 - 38544522
Alignment:
Q  456 aaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaacat 531  Q
    |||||||||||||||||| |||  | ||||||||||||| | ||||| | |||||||||| ||||||||||||||||    
T  38544446 aaaataaacaccataaaagacatccctacacacaacacctagccaaatcgtaccttcaacacccatgaggacaacat 38544522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 742
Target Start/End: Complemental strand, 27905549 - 27905506
Alignment:
Q  699 ctaatactcatacagcttccaccacctctcaacctttggtccac 742  Q
    ||||| |||||||||||||||||||||||||||||  |||||||    
T  27905549 ctaatgctcatacagcttccaccacctctcaacctccggtccac 27905506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 439 - 514
Target Start/End: Complemental strand, 20500321 - 20500245
Alignment:
Q  439 atatagacggaacatccaaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaac 514  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||| || | |||| ||||||||||||||||||||    
T  20500321 atataggcggaacacccaaaataaacaccataaaagacactcatacgcaaaccacctaaccaaaccctaccttcaac 20500245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 455 - 557
Target Start/End: Complemental strand, 32150428 - 32150325
Alignment:
Q  455 caaaataaacaccat-aaaaacactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaacatgatcaaataaacttcacctcct 553  Q
    ||||||||| ||||| |||||||  ||||||||||||||  ||| || |||||||||||||  ||| || |||||||  |||||||||| |||| |||||    
T  32150428 caaaataaaaaccatgaaaaacatccatacacacaacacataactaagccctaccttcaacatccacgaagacaacaccatcaaataaatttcaactcct 32150329  T
Q  554 aaat 557  Q
    ||||    
T  32150328 aaat 32150325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 530
Target Start/End: Original strand, 33968327 - 33968402
Alignment:
Q  456 aaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    |||||||||||  ||||| |||| | |||||||| |||| | |||||||||||||||||| ||| |||||||||||    
T  33968327 aaaataaacactgtaaaagacacccctacacacatcacctagccaaaccctaccttcaacacccttgaggacaaca 33968402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 729
Target Start/End: Original strand, 26385869 - 26386144
Alignment:
Q  439 atatagacggaacatccaaaataaacaccataaaaa-cactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaacatgatcaa 537  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||            ||| ||||||||||||||| |||||||||| ||||  | |||    
T  26385869 atataggcggaacacccaaaataaacaccataaaaatcactcatac------------acccaaccctaccttcaacacccatgaggaaaacaccaccaa 26385956  T
Q  538 ataaacttcacctcctaaatcatactccaccgcgaaccaccattgaacatgatatccataaccacccatcgctactactcacccccaaaaaatatacccc 637  Q
    ||||  ||| ||||||||| |  |||| | |  |||| |||  |||| ||||||||||||||||| |||||| |||||||||| |   | || | |||||    
T  26385957 ataagtttcccctcctaaa-cgaactcaatcatgaactaccgctgaaaatgatatccataaccactcatcgccactactcacctc---acaaaacacccc 26386052  T
Q  638 ttgaaatcaaaacaccttggtcgcatcaccatagctgagccacaccc-aaaaagggcccattctaatactcatacagcttccaccacctctca 729  Q
    |  ||||| ||||| ||||   ||||| ||||||||||| ||||||| ||||||| || || ||||||||||  ||| |||||||||||||||    
T  26386053 tctaaatc-aaacaacttgtatgcatctccatagctgagtcacacccaaaaaaggtcctatactaatactcagtcagtttccaccacctctca 26386144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 439 - 474
Target Start/End: Original strand, 2331795 - 2331830
Alignment:
Q  439 atatagacggaacatccaaaataaacaccataaaaa 474  Q
    ||||||||||||||||||||||||||||||||||||    
T  2331795 atatagacggaacatccaaaataaacaccataaaaa 2331830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 439 - 474
Target Start/End: Original strand, 2339328 - 2339363
Alignment:
Q  439 atatagacggaacatccaaaataaacaccataaaaa 474  Q
    ||||||||||||||||||||||||||||||||||||    
T  2339328 atatagacggaacatccaaaataaacaccataaaaa 2339363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 481
Target Start/End: Complemental strand, 33719339 - 33719292
Alignment:
Q  434 gctgaatatagacggaacatccaaaataaacaccataaaaacactcat 481  Q
    ||||||||||| ||||||||| ||| |||||||| |||||||||||||    
T  33719339 gctgaatataggcggaacatcgaaagtaaacaccctaaaaacactcat 33719292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 530
Target Start/End: Original strand, 28534240 - 28534294
Alignment:
Q  476 actcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    |||| ||||||||||| | | |||||||||||||||||| ||| |||||||||||    
T  28534240 actcctacacacaacaactagccaaaccctaccttcaacacccctgaggacaaca 28534294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 40292728 - 40292810
Alignment:
Q  446 cggaacatccaaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggaca 527  Q
    ||||||||||||| |||| ||||||||| | |||| ||||||| || || || ||||||||| ||||||| |||| |||||||    
T  40292728 cggaacatccaaagtaaaaaccataaaagatactcttacacacgacccctaatcaaaccctatcttcaacacccacgaggaca 40292810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 595 - 689
Target Start/End: Original strand, 30966986 - 30967077
Alignment:
Q  595 ataaccacccatcgctactactcacccccaaaaaatataccccttgaaatcaaaacaccttggtcgcatcaccatagctgagccacacccaaaaa 689  Q
    ||||||||||||||||||||||||  |||||||||   ||||||  ||||| ||||||| || || ||||||||||||||||| |||||||||||    
T  30966986 ataaccacccatcgctactactca--cccaaaaaaatcacccctctaaatc-aaacaccatgttctcatcaccatagctgagcgacacccaaaaa 30967077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 530
Target Start/End: Complemental strand, 20572425 - 20572349
Alignment:
Q  455 caaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    ||||||||||||||||||| |||| | ||||||||||||  |  || |||||||||||||| |||||||||||||||    
T  20572425 caaaataaacaccataaaagacacccctacacacaacacttactcataccctaccttcaacacccatgaggacaaca 20572349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 601
Target Start/End: Original strand, 30598841 - 30598954
Alignment:
Q  488 aacaccaaaccaaaccctaccttcaacgcccatgaggacaacatgatcaaataaacttcacctcctaaatcatactccaccgcgaaccaccattgaacat 587  Q
    |||||| |||||| |||||| || ||| ||| ||||||||||   | |||||||||||||||| |||||||| || ||| ||| ||| |||  ||||  |    
T  30598841 aacacctaaccaatccctacttttaacacccttgaggacaaccccaccaaataaacttcaccttctaaatcagacaccatcgcaaactaccgctgaaagt 30598940  T
Q  588 gatatccataacca 601  Q
    ||||||||||||||    
T  30598941 gatatccataacca 30598954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 493
Target Start/End: Complemental strand, 4472312 - 4472256
Alignment:
Q  439 atatagacggaacatcc-aaaataaacaccataaaaa-cactcatacacacaacacc 493  Q
    ||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||    
T  4472312 atatagacggaacatccgaaaataaacaccataaaaatcacccctacacacaacacc 4472256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 530
Target Start/End: Original strand, 16952056 - 16952149
Alignment:
Q  439 atatagacggaacatccaaaa-taaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    |||||| | |||||||||||| |||||| ||||||| |||||| ||||||||||||| |  ||   |||||||||||| ||||||| |||||||    
T  16952056 atataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaaca 16952149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 530
Target Start/End: Original strand, 17022721 - 17022814
Alignment:
Q  439 atatagacggaacatccaaaa-taaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    |||||| | |||||||||||| |||||| ||||||| |||||| ||||||||||||| |  ||   |||||||||||| ||||||| |||||||    
T  17022721 atataggcagaacatccaaaaataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaaca 17022814  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 530
Target Start/End: Original strand, 17853752 - 17853837
Alignment:
Q  446 cggaacatccaaaataaacaccataaaaa-cactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    ||||||| || |||||||||||||||||| ||  ||||| ||||||||| | |||||||||||||||| | |||||||||| ||||    
T  17853752 cggaacacccgaaataaacaccataaaaaacatccatactcacaacacctagccaaaccctaccttcaccacccatgaggaaaaca 17853837  T

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Target: scaffold1613 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 531
Target Start/End: Original strand, 725 - 801
Alignment:
Q  456 aaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaacat 531  Q
    |||||||||||||||||| |||  | ||||||||||||| | ||||| | |||||||||| ||||||||||||||||    
T  725 aaaataaacaccataaaagacatccctacacacaacacctagccaaatcgtaccttcaacacccatgaggacaacat 801  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 530
Target Start/End: Complemental strand, 1761016 - 1760924
Alignment:
Q  439 atatagacggaacatccaaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    |||||||||||| | |||| ||||||| ||||||| ||| |||||| ||||||||| || |||||||| |||||||| | |||| ||||||||    
T  1761016 atatagacggaaaacccaatataaacatcataaaagacattcatacgcacaacacctaatcaaaccctgccttcaacactcatgcggacaaca 1760924  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 530
Target Start/End: Original strand, 25184841 - 25184925
Alignment:
Q  447 ggaacatccaaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    |||||| || || |||||||||||||| |||  ||||||||||| ||| | |||| ||||||||||||| | |||||||||||||    
T  25184841 ggaacacccgaagtaaacaccataaaagacatccatacacacaatacctagccaagccctaccttcaacactcatgaggacaaca 25184925  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 526
Target Start/End: Complemental strand, 15907044 - 15906989
Alignment:
Q  471 aaaacactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggac 526  Q
    ||||||| | ||||||||||||| | || ||||||||||||||| |||||||||||    
T  15907044 aaaacacccctacacacaacacctagcccaaccctaccttcaacacccatgaggac 15906989  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 447 - 527
Target Start/End: Original strand, 823117 - 823199
Alignment:
Q  447 ggaacatccaaaataaacaccataaaaa--cactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggaca 527  Q
    |||||| ||||| |||||||||||||||  ||| | |||||||||| || || ||| ||||||||||||| ||||||||||||    
T  823117 ggaacacccaaattaaacaccataaaaagacacccttacacacaacccctaatcaacccctaccttcaacacccatgaggaca 823199  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 488 - 531
Target Start/End: Complemental strand, 16266072 - 16266029
Alignment:
Q  488 aacaccaaaccaaaccctaccttcaacgcccatgaggacaacat 531  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  16266072 aacacctaaccaaaccctaccttcaacacccatgaggacaacat 16266029  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 530
Target Start/End: Original strand, 45354638 - 45354713
Alignment:
Q  456 aaaataaacaccataaaa-acactcatacacacaacaccaaaccaaaccctaccttcaacgcccatgaggacaaca 530  Q
    |||||||||| ||||||| |||| | |||||||| |||| | |||||||||||||||||| || || |||||||||    
T  45354638 aaaataaacatcataaaagacacccctacacacagcacctagccaaaccctaccttcaacacctattaggacaaca 45354713  T

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