View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086-Insertion-4 (Length: 706)

Name: NF5086-Insertion-4
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086-Insertion-4
NF5086-Insertion-4
[»] chr4 (16 HSPs)
chr4 (28-547)||(44188682-44189196)
chr4 (547-706)||(44188486-44188645)
chr4 (173-215)||(16432979-16433021)
chr4 (173-221)||(38453262-38453310)
chr4 (173-220)||(12671765-12671812)
chr4 (178-221)||(22040652-22040695)
chr4 (167-221)||(52270046-52270100)
chr4 (168-221)||(2186349-2186402)
chr4 (176-221)||(28435264-28435309)
chr4 (169-221)||(2430990-2431042)
chr4 (173-221)||(16304114-16304162)
chr4 (173-221)||(27740737-27740785)
chr4 (173-221)||(36203233-36203281)
chr4 (173-221)||(39171386-39171434)
chr4 (173-221)||(43374288-43374336)
chr4 (173-221)||(49041997-49042045)
[»] scaffold0066 (1 HSPs)
scaffold0066 (176-221)||(17504-17549)
[»] chr7 (13 HSPs)
chr7 (173-221)||(27772032-27772080)
chr7 (173-220)||(25246768-25246815)
chr7 (168-220)||(8683062-8683114)
chr7 (173-221)||(44558790-44558838)
chr7 (173-220)||(3948051-3948098)
chr7 (173-219)||(35142167-35142213)
chr7 (168-221)||(30857240-30857293)
chr7 (173-221)||(34807215-34807264)
chr7 (176-220)||(3672569-3672613)
chr7 (173-221)||(8879763-8879811)
chr7 (173-221)||(10244724-10244772)
chr7 (173-221)||(40762223-40762271)
chr7 (173-221)||(48069853-48069901)
[»] chr1 (15 HSPs)
chr1 (173-221)||(44641524-44641572)
chr1 (176-221)||(47961305-47961350)
chr1 (173-221)||(29233990-29234038)
chr1 (173-221)||(52441527-52441575)
chr1 (169-216)||(8153128-8153175)
chr1 (175-221)||(11242001-11242047)
chr1 (175-221)||(31401669-31401715)
chr1 (176-221)||(3393584-3393629)
chr1 (182-219)||(13779584-13779621)
chr1 (176-221)||(34521206-34521251)
chr1 (168-221)||(42045388-42045441)
chr1 (173-221)||(3693812-3693860)
chr1 (173-221)||(7158770-7158818)
chr1 (173-221)||(24324416-24324464)
chr1 (173-221)||(26755613-26755661)
[»] chr2 (24 HSPs)
chr2 (174-221)||(25186258-25186305)
chr2 (176-221)||(29734691-29734736)
chr2 (168-221)||(33063978-33064031)
chr2 (173-221)||(1861825-1861873)
chr2 (166-221)||(16877114-16877169)
chr2 (166-221)||(16989245-16989300)
chr2 (168-219)||(22571883-22571934)
chr2 (173-220)||(34464426-34464473)
chr2 (175-221)||(39761437-39761483)
chr2 (168-221)||(9519730-9519783)
chr2 (174-219)||(13490723-13490768)
chr2 (168-221)||(27244649-27244702)
chr2 (168-221)||(31543004-31543057)
chr2 (173-221)||(3197095-3197143)
chr2 (173-221)||(4122029-4122077)
chr2 (173-221)||(6723093-6723141)
chr2 (173-221)||(7206122-7206170)
chr2 (173-221)||(9383225-9383273)
chr2 (173-221)||(9686454-9686502)
chr2 (176-220)||(30762512-30762556)
chr2 (177-221)||(41526792-41526836)
chr2 (173-221)||(42791292-42791340)
chr2 (173-221)||(43117206-43117254)
chr2 (173-221)||(44694685-44694733)
[»] chr8 (15 HSPs)
chr8 (160-221)||(8717491-8717552)
chr8 (173-221)||(1877678-1877726)
chr8 (168-220)||(13286123-13286175)
chr8 (173-221)||(27718910-27718958)
chr8 (173-219)||(37750017-37750063)
chr8 (176-221)||(574384-574429)
chr8 (173-221)||(15310319-15310368)
chr8 (173-221)||(15490688-15490737)
chr8 (173-221)||(34997455-34997504)
chr8 (173-221)||(6447186-6447234)
chr8 (173-221)||(12714386-12714434)
chr8 (173-221)||(17062355-17062403)
chr8 (173-221)||(17585955-17586003)
chr8 (177-221)||(26991773-26991817)
chr8 (173-221)||(37015852-37015900)
[»] chr5 (11 HSPs)
chr5 (168-221)||(6624768-6624821)
chr5 (176-221)||(18489092-18489137)
chr5 (173-221)||(32200463-32200511)
chr5 (173-219)||(8350667-8350713)
chr5 (173-219)||(18619033-18619079)
chr5 (173-219)||(19248476-19248522)
chr5 (173-219)||(39610359-39610405)
chr5 (168-221)||(40445975-40446028)
chr5 (173-221)||(18538605-18538653)
chr5 (173-221)||(37932327-37932375)
chr5 (173-221)||(40715965-40716013)
[»] scaffold0118 (1 HSPs)
scaffold0118 (169-221)||(39991-40043)
[»] chr6 (13 HSPs)
chr6 (173-221)||(1918474-1918522)
chr6 (175-221)||(4450261-4450307)
chr6 (167-221)||(32053779-32053833)
chr6 (173-221)||(6833475-6833524)
chr6 (168-221)||(10780123-10780176)
chr6 (173-218)||(15046935-15046980)
chr6 (168-221)||(21373422-21373475)
chr6 (176-221)||(24623333-24623378)
chr6 (175-219)||(12028-12072)
chr6 (173-221)||(7081670-7081718)
chr6 (173-221)||(10778837-10778885)
chr6 (173-221)||(18256880-18256928)
chr6 (173-221)||(20744135-20744183)
[»] chr3 (11 HSPs)
chr3 (173-221)||(7824804-7824852)
chr3 (173-221)||(7827505-7827553)
chr3 (173-221)||(7829893-7829941)
chr3 (173-221)||(10498711-10498759)
chr3 (173-221)||(16792990-16793038)
chr3 (173-221)||(17507715-17507763)
chr3 (173-221)||(20370297-20370345)
chr3 (173-221)||(21331433-21331481)
chr3 (177-221)||(50570205-50570249)
chr3 (177-221)||(51505874-51505918)
chr3 (173-213)||(53429152-53429192)
[»] scaffold0768 (1 HSPs)
scaffold0768 (173-221)||(6404-6453)
[»] scaffold0180 (1 HSPs)
scaffold0180 (173-221)||(17729-17777)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 28 - 547
Target Start/End: Complemental strand, 44189196 - 44188682
Alignment:
Q  28 ttcactagcgacgtggcaatgtatactttttaataataaaaattggaatttacctaccgaatttgtatacaattaattacgcttaaatgtttaaaagaac 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44189196 ttcactagcgatgtggcaatgtatactttttaataataaaaattggaatttacctaccgaatttgtatacaattaattacgcttaaatgtttaaaagaac 44189097  T
Q  128 acataacgactcttttgtatgttatgaataccatatataaatgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagggccacc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||    
T  44189096 acataacgactcttttgtatgttatgaataccatatataaatgtgctcgtgagtttagctcagttggcatggataatgcataatatatgcaagggccacc 44188997  T
Q  228 acnnnnnnnnnnnnnnntcatatataaatgaattacactcaactttttgaacaattttctcctcataaaataattttaaaatatatttggttccatgctt 327  Q
    ||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||    
T  44188996 ac-----aaaaaaaaaatcatatataaatgaattacactcaactttttgaacaattttctcctcataaaataattttaaaatacatatggttccatgatt 44188902  T
Q  328 aatattccgattagtgattataatttnnnnnnnnnnnnnnntaataggtaaaagtaagctaggctcaaaggcccctgaaacaatacaagtccctctatgt 427  Q
    |||||||||||||||||||||||||                |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  44188901 aatattccgattagtgattataattgaaaaataaaataaaataataggtaaaagtaagctaggctcaaaggtcactgaaacaatacaagtccctctatgt 44188802  T
Q  428 ccttcggtgttggcattaaagacaagttgcacaaatagatgactggcagcaaccaattcctaggacacaacaggtgctgagaatgcttttgcaagagtag 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188801 ccttcggtgttggcattaaagacaagttgcacaaatagatgactggcagcaaccaattcctaggacacaacaggtgctgagaatgcttttgcaagagtag 44188702  T
Q  528 tgtactacctatggtataat 547  Q
    ||||||||||||||||||||    
T  44188701 tgtactacctatggtataat 44188682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 547 - 706
Target Start/End: Complemental strand, 44188645 - 44188486
Alignment:
Q  547 tcttatacgaattcggaatcggggacccgagattggttattgtatgaacaaggtatggcaaattatgtcccaactactgcatttgcaatctcattagaat 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44188645 tcttatacgaattcggaatcggggacccgagattggttattgtatgaacaaggtatggcaaattatgtcccaactactgcatttgcaatctcattagaat 44188546  T
Q  647 gttgtcaaaagaattctttgatatctcaaacggaccactgatattggtcttgtatagcag 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44188545 gttgtcaaaagaattctttgatatctcaaacggaccactgatattggtcttgtttagcag 44188486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 16433021 - 16432979
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatat 215  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  16433021 ctcgtgagcttagctcagctgacatagacaatgcataatatat 16432979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 38453262 - 38453310
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| || ||| |||||||||||||||||||||||    
T  38453262 ctcgtgagcttagctcagttggcatggacaatgcataatatatgcaagg 38453310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 12671812 - 12671765
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    |||||||||||||||||| ||  ||||||||||||||| |||||||||    
T  12671812 ctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaag 12671765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 22040652 - 22040695
Alignment:
Q  178 gagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||| ||| || |||||||||||||||||||||||    
T  22040652 gagtttagctcagttgatatggacaatgcataatatatgcaagg 22040695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 52270100 - 52270046
Alignment:
Q  167 aatgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||| |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  52270100 aatgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 52270046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 2186402 - 2186349
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  2186402 atgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 2186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 28435309 - 28435264
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||    
T  28435309 gtgagtttagctcagttggtatggacaatgcataatatatgcaagg 28435264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 2430990 - 2431042
Alignment:
Q  169 tgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||||||| ||  || |||||| ||||| ||||||||||    
T  2430990 tgtgctcgtgagtttagctcagttggtattgacaatacataaaatatgcaagg 2431042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 16304162 - 16304114
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||| |||||||||||| ||  || |||||||||||||||||||||||    
T  16304162 ctcgtaagtttagctcagttggtatggacaatgcataatatatgcaagg 16304114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27740737 - 27740785
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| || |||||| ||| ||||||||||||||| ||||||||||    
T  27740737 ctcgtgaggttggctcagttgatatagacaatgcataaaatatgcaagg 27740785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 36203233 - 36203281
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| |  |||||||||||||||||||||||    
T  36203233 ctcgtgagcttagctcagttgataaggacaatgcataatatatgcaagg 36203281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 39171434 - 39171386
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| || |||||||||||| ||||||||||    
T  39171434 ctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaagg 39171386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 43374336 - 43374288
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| || |||||||||||| ||||||||||    
T  43374336 ctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaagg 43374288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 49042045 - 49041997
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| |||||  || ||| ||||||||||||||||||||||||||    
T  49042045 ctcgtgagcttagcctagttgatatagacaatgcataatatatgcaagg 49041997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 17504 - 17549
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||    
T  17504 gtgagtttagctcagctgacatggacaatgcataatatatgcaagg 17549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 27772032 - 27772080
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  27772032 ctcgtgagcttagttcagatgacatagacaatgcataatataagcaagg 27772080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 25246768 - 25246815
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||    
T  25246768 ctcgtgagtttagctcagttgataaagacaatgcataatatatgcaag 25246815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 8683062 - 8683114
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    |||| |||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  8683062 atgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaag 8683114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 44558838 - 44558790
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  || |||||||||||||||||||||||    
T  44558838 ctcgtgagtttagctcagttggtatggacaatgcataatatatgcaagg 44558790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 3948051 - 3948098
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    |||||||||||| ||||| ||| | |||||||||||||||||||||||    
T  3948051 ctcgtgagtttaactcagttgatagagacaatgcataatatatgcaag 3948098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 35142213 - 35142167
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||||||| ||||||||| ||| || |||||||||||||||||||||    
T  35142213 ctcgtgagcttagctcagttgatatggacaatgcataatatatgcaa 35142167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 30857240 - 30857293
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| ||||||||||||||| || ||  || |||||||||||||||||||||||    
T  30857240 atgtcctcgtgagtttagcttagttggtatggacaatgcataatatatgcaagg 30857293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 34807215 - 34807264
Alignment:
Q  173 ctcgtgagtttagctcagatgacataga-caatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||| | ||| |||||||||||||||||||||    
T  34807215 ctcgtgagtttagctcagttgataaagaacaatgcataatatatgcaagg 34807264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 3672613 - 3672569
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    ||||||||||||||| ||| || |||||| |||||||||||||||    
T  3672613 gtgagtttagctcagttgatatggacaatacataatatatgcaag 3672569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 8879811 - 8879763
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||  ||||||||||||||||||||||||||    
T  8879811 ctcgtgagcttaactcagttggtatagacaatgcataatatatgcaagg 8879763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 10244724 - 10244772
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  10244724 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 10244772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 40762271 - 40762223
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||||||  |  |||||||||||||||||||||||    
T  40762271 ctcgtgagcttagctcagatggtaaggacaatgcataatatatgcaagg 40762223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 48069901 - 48069853
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||||||  ||||||||||||||||| ||||    
T  48069901 ctcgtgagcttagctcagttgacatgaacaatgcataatatatgtaagg 48069853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 44641524 - 44641572
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||    
T  44641524 ctcgtgagtttagctcagttgatatggacaatgcataatatatgcaagg 44641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 47961350 - 47961305
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| || || ||||||||||||||||||||||||    
T  47961350 gtgagtttagctcagttggcagagacaatgcataatatatgcaagg 47961305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 29234038 - 29233990
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  ||||||||||||||| ||||||||||    
T  29234038 ctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaagg 29233990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 52441575 - 52441527
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||||    
T  52441575 ctcgtgagcttagctcagttggtatagacaatgcataatatatgcaagg 52441527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 8153128 - 8153175
Alignment:
Q  169 tgtgctcgtgagtttagctcagatgacatagacaatgcataatatatg 216  Q
    |||||||||||||||| ||||| ||  |||||||||||||||||||||    
T  8153128 tgtgctcgtgagtttaactcagttggtatagacaatgcataatatatg 8153175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 11242047 - 11242001
Alignment:
Q  175 cgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  11242047 cgtgagtttaactcagttgacagagacaatgcataatatatgtaagg 11242001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 31401715 - 31401669
Alignment:
Q  175 cgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||| ||||| ||||| | ||||||||||||||||||||||    
T  31401715 cgtgagtttaactcagttgacaaaaacaatgcataatatatgcaagg 31401669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 3393629 - 3393584
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||| ||  ||||||||||||||||||||||    
T  3393629 gtgagtttagctcagttgatatgaacaatgcataatatatgcaagg 3393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 13779584 - 13779621
Alignment:
Q  182 ttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  13779584 ttagctcagttgatatagacaatgcataatatatgcaa 13779621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 34521251 - 34521206
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||    
T  34521251 gtgagtttagctcagttggtatggacaatgcataatatatgcaagg 34521206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 42045441 - 42045388
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  42045441 atgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 42045388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 3693860 - 3693812
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| |||||||| |||||||||||| ||||    
T  3693860 ctcgtgagcttagctcagttgatatagacaaagcataatatatgtaagg 3693812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7158770 - 7158818
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||| ||| ||| || |||||||||||| ||||||||||    
T  7158770 ctcgtgagtttagcccagttgatatggacaatgcataaaatatgcaagg 7158818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 24324464 - 24324416
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| |  |||||||||||||||||||||||    
T  24324464 ctcgtgagcttagctcaggtgataaggacaatgcataatatatgcaagg 24324416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 26755613 - 26755661
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| || |||||||||| ||||||||||||    
T  26755613 ctcgtgagcttagctcagttgatatggacaatgcattatatatgcaagg 26755661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 25186305 - 25186258
Alignment:
Q  174 tcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||||    
T  25186305 tcgtgagtttagctcagttgatatggacaatgcataatatatgcaagg 25186258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 29734691 - 29734736
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||| || |||||||||||||||||||||||    
T  29734691 gtgagtttagctcagttgatatggacaatgcataatatatgcaagg 29734736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 33063978 - 33064031
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||| || |||||||||||||||||||||||    
T  33063978 atgtcctcgtgagcttagctcagttgatatggacaatgcataatatatgcaagg 33064031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1861873 - 1861825
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| || |||||||||||||||||||||||    
T  1861873 ctcgtgagcttagctcagctgatatggacaatgcataatatatgcaagg 1861825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 16877114 - 16877169
Alignment:
Q  166 aaatgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||| |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  16877114 aaatgtcctcgtgagcttagctcagctggtatggacaatgcataatatatgcaagg 16877169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 16989245 - 16989300
Alignment:
Q  166 aaatgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||| |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  16989245 aaatgtcctcgtgagcttagctcagctggtatggacaatgcataatatatgcaagg 16989300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 22571934 - 22571883
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||| |||||||  ||||||||| ||| ||||||||||||||||||||||||    
T  22571934 atgtcctcgtgaacttagctcagttgatatagacaatgcataatatatgcaa 22571883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 34464473 - 34464426
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    |||||||||||||||||| ||  || ||||||||||||||||||||||    
T  34464473 ctcgtgagtttagctcagttggtatggacaatgcataatatatgcaag 34464426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 39761437 - 39761483
Alignment:
Q  175 cgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||||    
T  39761437 cgtgagtttagctcagttgataaggacaatgcataatatatgcaagg 39761483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 9519783 - 9519730
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||  ||| || |||||||||||||||||||||||    
T  9519783 atgttctcgtgagcttagctcaattgatatggacaatgcataatatatgcaagg 9519730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 13490723 - 13490768
Alignment:
Q  174 tcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    ||||||||||||||||| ||| | |||||||| |||||||||||||    
T  13490723 tcgtgagtttagctcagttgatagagacaatgtataatatatgcaa 13490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 27244649 - 27244702
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| ||| |  |||||||||||||||||||||||    
T  27244649 atgtcctcgtgagcttagctcagttgatagggacaatgcataatatatgcaagg 27244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 31543004 - 31543057
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||||||  || || ||||||||||||||||||||    
T  31543004 atgtcctcgtgagcttagctcagatggtatggataatgcataatatatgcaagg 31543057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 3197143 - 3197095
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  |  |||||||||||||||||||||||    
T  3197143 ctcgtgagtttagctcagttggtagggacaatgcataatatatgcaagg 3197095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 4122077 - 4122029
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  4122077 ctcgtgagcttagctcagctggtatggacaatgcataatatatgcaagg 4122029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 6723141 - 6723093
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| || ||||||| |||||||||||||||    
T  6723141 ctcgtgagtttaactcagttgatatggacaatgtataatatatgcaagg 6723093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7206122 - 7206170
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  7206122 ctcgtgagcttagctcagttggtagagacaatgcataatatatgcaagg 7206170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 9383273 - 9383225
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  9383273 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 9383225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 9686454 - 9686502
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||| |||||||||| ||  ||||||||| ||||||||||||||||    
T  9686454 ctcgtgaatttagctcagttggtatagacaatacataatatatgcaagg 9686502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 30762556 - 30762512
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    ||||||||||||||| ||  ||||||||||||||| |||||||||    
T  30762556 gtgagtttagctcagttggtatagacaatgcataaaatatgcaag 30762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 41526836 - 41526792
Alignment:
Q  177 tgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| ||||||||| |||||| ||||||||||| |||||||||||    
T  41526836 tgagcttagctcagttgacatggacaatgcatagtatatgcaagg 41526792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 42791292 - 42791340
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||  |||| | |||||||||||||||||||||||    
T  42791292 ctcgtgagcttagctcacttgacttggacaatgcataatatatgcaagg 42791340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 43117254 - 43117206
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  |  |||||||||||||||||||||||    
T  43117254 ctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaagg 43117206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 44694685 - 44694733
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||  ||| ||||| ||| ||||||||||||||||||||||||||    
T  44694685 ctcgtgaacttaactcagttgatatagacaatgcataatatatgcaagg 44694733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 8717552 - 8717491
Alignment:
Q  160 atatataaatgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||| || | |||||||||||||||||| ||  || |||||||||||||||||||||||    
T  8717552 atatatatatatcctcgtgagtttagctcagttggtatggacaatgcataatatatgcaagg 8717491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1877726 - 1877678
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| ||||||||||||||||||||||||||    
T  1877726 ctcgtgagcttaactcagttgatatagacaatgcataatatatgcaagg 1877678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 13286123 - 13286175
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaag 220  Q
    |||| |||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  13286123 atgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaag 13286175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 27718958 - 27718910
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| || |||||||||||||||||||||||    
T  27718958 ctcgtgagcttagctcagttgatatggacaatgcataatatatgcaagg 27718910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 37750063 - 37750017
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||    
T  37750063 ctcgtgagtttagctcagttgatatgaacaatgcataatatatgcaa 37750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 574384 - 574429
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||| ||||||||| ||| ||||||||||||||||||||| ||||    
T  574384 gtgagcttagctcagttgatatagacaatgcataatatatgtaagg 574429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 15310319 - 15310368
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcat-aatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  15310319 ctcgtgagcttagctcagttgatatagacaatgcataaatatatgcaagg 15310368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 15490688 - 15490737
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcat-aatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  15490688 ctcgtgagcttagctcagttgatatagacaatgcataaatatatgcaagg 15490737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 34997455 - 34997504
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcat-aatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  34997455 ctcgtgagcttagctcagttgatatagacaatgcataaatatatgcaagg 34997504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 6447186 - 6447234
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||  || |||||||||||||||||||||||    
T  6447186 ctcgtgagtttaactcagttggtatggacaatgcataatatatgcaagg 6447234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 12714434 - 12714386
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  |  |||||||||||||||||||||||    
T  12714434 ctcgtgagtttagctcagttggaagggacaatgcataatatatgcaagg 12714386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 17062403 - 17062355
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| ||||||||| ||||||||||||||||    
T  17062403 ctcgtgagcttaactcagttgatatagacaatacataatatatgcaagg 17062355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 17585955 - 17586003
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||| ||||| ||| ||||||||| ||||||||||||||||    
T  17585955 ctcgtgagcttaactcagttgatatagacaatacataatatatgcaagg 17586003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 26991817 - 26991773
Alignment:
Q  177 tgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||| |||||| ||| || |||||||||||||||||||||||    
T  26991817 tgagtttggctcagttgatatggacaatgcataatatatgcaagg 26991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 37015900 - 37015852
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  | ||||||||||||||||||||||||    
T  37015900 ctcgtgagcttagctcagttggtagagacaatgcataatatatgcaagg 37015852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 6624768 - 6624821
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||| ||||||||| || ||| |||||||||||||||||||||||    
T  6624768 atgtcctcgtgagcttagctcagttggcatggacaatgcataatatatgcaagg 6624821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 18489137 - 18489092
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  18489137 gtgagtttagctcagttggtatagacaatgcataatatatgcaagg 18489092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 32200511 - 32200463
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  32200511 ctcgtgagcttagctcagttgacagggacaatgcataatatatgcaagg 32200463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 8350667 - 8350713
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||||||||||| ||||| || ||| |||||||||||||||||||||    
T  8350667 ctcgtgagtttaactcagttggcatggacaatgcataatatatgcaa 8350713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 18619033 - 18619079
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||||||| ||||||||| || || ||||||||||||||||||||||    
T  18619033 ctcgtgagcttagctcagctggcagagacaatgcataatatatgcaa 18619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 19248476 - 19248522
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||||    
T  19248476 ctcgtgagcttagctcagttggtatagacaatgcataatatatgcaa 19248522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 39610405 - 39610359
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||||||| ||||||||| ||| || |||||||||||||||||||||    
T  39610405 ctcgtgagcttagctcagttgatatggacaatgcataatatatgcaa 39610359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 40445975 - 40446028
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| |||||||||||| ||||| ||| |  |||||||||||||||||||||||    
T  40445975 atgtcctcgtgagtttaactcagttgataaggacaatgcataatatatgcaagg 40446028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 18538605 - 18538653
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| || ||  | ||||||||||||||||||||||||    
T  18538605 ctcgtgagtttagctaagttggtagagacaatgcataatatatgcaagg 18538653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 37932327 - 37932375
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  37932327 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 37932375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 40716013 - 40715965
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||  ||| || |||||||||||||||||||||||    
T  40716013 ctcgtgagcttagctcaattgatatggacaatgcataatatatgcaagg 40715965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 39991 - 40043
Alignment:
Q  169 tgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  39991 tgtgctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 40043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1918522 - 1918474
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||  ||||||||||||||||||||||||||    
T  1918522 ctcgtgagtttaactcagttggtatagacaatgcataatatatgcaagg 1918474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 4450261 - 4450307
Alignment:
Q  175 cgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  4450261 cgtgagcttagctcagttgataaagacaatgcataatatatgcaagg 4450307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 32053779 - 32053833
Alignment:
Q  167 aatgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||| |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  32053779 aatgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 32053833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 6833475 - 6833524
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcat-aatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  6833475 ctcgtgagcttagctcagttgatatagacaatgcataaatatatgcaagg 6833524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 10780176 - 10780123
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||| ||||||||| ||  |  |||||||||||||||||||||||    
T  10780176 atgtgctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 10780123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 15046980 - 15046935
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgca 218  Q
    ||||||||||||||| |  ||| |||||||||||||||||||||||    
T  15046980 ctcgtgagtttagcttaattgatatagacaatgcataatatatgca 15046935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 21373475 - 21373422
Alignment:
Q  168 atgtgctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||||||||||  ||  || |||||||||||| ||||||||||    
T  21373475 atgtgctcgtgagtttagctcaattggtatggacaatgcataaaatatgcaagg 21373422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 24623378 - 24623333
Alignment:
Q  176 gtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||||| ||| || |||||||||||||||||| ||||    
T  24623378 gtgagtttagctcagttgatatggacaatgcataatatatgtaagg 24623333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 12072 - 12028
Alignment:
Q  175 cgtgagtttagctcagatgacatagacaatgcataatatatgcaa 219  Q
    |||||||||||||||| ||| | ||| ||||||||||||||||||    
T  12072 cgtgagtttagctcagttgatagagataatgcataatatatgcaa 12028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 7081718 - 7081670
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| | ||||||| ||||||||||||||||    
T  7081718 ctcgtgagcttagctcagttgataaagacaatacataatatatgcaagg 7081670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 10778837 - 10778885
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    ||||||||||||  |||  ||||||||||||||||||||||||| ||||    
T  10778837 ctcgtgagtttaattcaattgacatagacaatgcataatatatgtaagg 10778885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 18256880 - 18256928
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| |  |||||||||||||||||||||||    
T  18256880 ctcgtgagcttagctcagttgataaggacaatgcataatatatgcaagg 18256928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 20744135 - 20744183
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  20744135 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 20744183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7824804 - 7824852
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| ||||||||| ||||||||||||||||    
T  7824804 ctcgtgagtttaactcagttgatatagacaatacataatatatgcaagg 7824852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7827505 - 7827553
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| || |||||||||||||||||| ||||    
T  7827505 ctcgtgagtttaactcagttgatatggacaatgcataatatatgtaagg 7827553  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 7829893 - 7829941
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||| ||||| ||| || |||||||||||||||||| ||||    
T  7829893 ctcgtgagtttaactcagttgatatggacaatgcataatatatgtaagg 7829941  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 10498759 - 10498711
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  10498759 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 10498711  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 16793038 - 16792990
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||| ||| ||  ||||||||||||||||||||||||||    
T  16793038 ctcgtgagcttagcacagttggtatagacaatgcataatatatgcaagg 16792990  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 17507763 - 17507715
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||  ||||||||| ||| || |||||||||||||||||||||||    
T  17507763 ctcgtgaaattagctcagttgatattgacaatgcataatatatgcaagg 17507715  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 20370345 - 20370297
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||| || |||||||||||| ||||||||||    
T  20370345 ctcgtgagcttagctcagttgatatggacaatgcataaaatatgcaagg 20370297  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 21331481 - 21331433
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||| ||||||||| ||  || |||||||||||||||||||||||    
T  21331481 ctcgtgagcttagctcagttgttatggacaatgcataatatatgcaagg 21331433  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 50570249 - 50570205
Alignment:
Q  177 tgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||| ||||||||| ||  ||||||||||||||||||||||||||    
T  50570249 tgagcttagctcagttggtatagacaatgcataatatatgcaagg 50570205  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 51505874 - 51505918
Alignment:
Q  177 tgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||| ||| || |||||||||||| ||||||||||    
T  51505874 tgagtttagctcagttgatatggacaatgcataaaatatgcaagg 51505918  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 53429152 - 53429192
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatat 213  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  53429152 ctcgtgagtttagctcagttggtatagacaatgcataatat 53429192  T

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Target: scaffold0768 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 6453 - 6404
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcat-aatatatgcaagg 221  Q
    |||||||| ||||||||| ||| ||||||||||||| |||||||||||||    
T  6453 ctcgtgagcttagctcagttgatatagacaatgcataaatatatgcaagg 6404  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 17729 - 17777
Alignment:
Q  173 ctcgtgagtttagctcagatgacatagacaatgcataatatatgcaagg 221  Q
    |||||||||||||||||| ||  || |||||||||||||| ||||||||    
T  17729 ctcgtgagtttagctcagttggtatggacaatgcataatacatgcaagg 17777  T

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