View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086-Insertion-5 (Length: 672)

Name: NF5086-Insertion-5
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086-Insertion-5
NF5086-Insertion-5
[»] chr3 (1 HSPs)
chr3 (7-666)||(53147896-53148553)
[»] chr2 (1 HSPs)
chr2 (172-431)||(11734137-11734396)
[»] chr4 (7 HSPs)
chr4 (170-430)||(5530564-5530824)
chr4 (160-430)||(5936387-5936657)
chr4 (224-430)||(5922978-5923184)
chr4 (172-430)||(38178777-38179035)
chr4 (49-125)||(5530449-5530525)
chr4 (47-92)||(5923310-5923355)
chr4 (28-110)||(38179091-38179173)
[»] chr8 (2 HSPs)
chr8 (175-430)||(40919556-40919811)
chr8 (307-431)||(45319382-45319506)
[»] chr1 (1 HSPs)
chr1 (173-419)||(45454432-45454678)
[»] chr7 (1 HSPs)
chr7 (276-419)||(34839810-34839953)


Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 7 - 666
Target Start/End: Complemental strand, 53148553 - 53147896
Alignment:
Q  7 aaatctcattcttcatcaacgatgagagagatcttgcacgttcaaggtggccaatgcggtaaccaaattggatccaaattctgggaggtgatatgcgacg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148553 aaatctcattcttcatcaacgatgagagagatcttgcacgttcaaggtggccaatgcggtaaccaaattggatccaaattctgggaggtgatatgcgacg 53148454  T
Q  107 aacatggcattgatccaactggtaaatatgtaagcgaaggtggaaatgatactcaattggaaaggatcaatgtgtattacaatgaagcttctggtggaag 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148453 aacacggcattgatccaactggtaaatatgtaagcgaaggtggaaatgatactcaattggaaaggatcaatgtgtattacaatgaagcttctggtggaag 53148354  T
Q  207 gtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148353 gtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtg 53148254  T
Q  307 tttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148253 tttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcag 53148154  T
Q  407 agaattgtgattgcttgcaaggt--aaatttatgtttctcatcactcaattgagattaatgaatgtttcttgattctcacaatgtcatttgcttaattaa 504  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  53148153 agaattgtgattgcttgcaaggtaaaaatttatgtttctcatcactcaattgagatt----aatgtttcttgattctcacaatgtcatttgcttaattaa 53148058  T
Q  505 cttcgttcaatttcgattcatatctagatcctttgaatttcattgttcatgtatatctctgtttctatgtcttgattatcgacgattgaaatcgtgacga 604  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  53148057 cttcgttcaatttcgattcatatctagatccgttgaatttcattgttcatgtttatctctgtttctatgtcttgattatcgatgattgaaatcgtgacga 53147958  T
Q  605 ttcagaggttataaaatcctgcagtataattgagtaaatttgaaaaacgtgcactctgaaaa 666  Q
    |||||||||||||||||||||||||||||||||   || ||||| || ||||||||||||||    
T  53147957 ttcagaggttataaaatcctgcagtataattgaagtaagttgaagaatgtgcactctgaaaa 53147896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 172 - 431
Target Start/End: Complemental strand, 11734396 - 11734137
Alignment:
Q  172 atcaatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtc 271  Q
    |||||||| ||||||||||| ||   ||||||||||||||||||  | || ||||||||||||||||| ||||||||||||||     | ||||| ||||    
T  11734396 atcaatgtttattacaatgaggcaagtggtggaaggtatgttccacgcgctgttcttatggatcttgagcctggtactatggattccgttagatccggtc 11734297  T
Q  272 cgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgat 371  Q
    |||| ||| |||||||||||||||||||||| ||||| || || ||||||||||| ||||||||||| |||||||||||||||||||| |||||| | ||    
T  11734296 cgtttggtcagatctttcgtcctgataattttgtgttcggtcagtctggtgctgggaataattgggctaaaggtcattataccgaaggcgctgagcttat 11734197  T
Q  372 tgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggtaa 431  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11734196 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggtaa 11734137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 7e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 5530564 - 5530824
Alignment:
Q  170 ggatcaatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctgg 269  Q
    ||||| |||||||||||||||||||   ||||||||| | |||||| ||||| |||||||||||||||||||| ||||||||||| |||||| | |||||    
T  5530564 ggatcgatgtgtattacaatgaagcaagtggtggaagatttgttccgagagcggttcttatggatcttgaaccgggtactatggatagtatccggtctgg 5530663  T
Q  270 tccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttg 369  Q
     ||||  ||| |||||||| | || |||||||| |||||||| ||   ||||||||| ||||| ||||| ||||| |||||||| ||||| |||||| |     
T  5530664 accgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggcattatactgaaggcgctgagctt 5530763  T
Q  370 attgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta 430  Q
    ||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| ||||    
T  5530764 attgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta 5530824  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 160 - 430
Target Start/End: Complemental strand, 5936657 - 5936387
Alignment:
Q  160 caattggaaaggatcaatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagta 259  Q
    ||||||||| |||||||||||||||||||||||||   |||||||||||  ||||||||||| |||||||||||||||||||| || || ||||| |||     
T  5936657 caattggaacggatcaatgtgtattacaatgaagcaagtggtggaaggttcgttcctagagcggttcttatggatcttgaaccgggaacgatggacagtg 5936558  T
Q  260 tcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaagg 359  Q
    || | ||||| |||| |||| |||||||| | || ||||| || || ||||||||   ||||||||||||||| ||||| ||||| ||||| || |||||    
T  5936557 tccggtctggaccgtacggtcagatctttagaccggataactttgtctttggacagagtggtgctggtaataactgggctaaaggacattacactgaagg 5936458  T
Q  360 tgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta 430  Q
     |||||| | ||||| |||||||||||||||||| | |||||||| || ||  ||||||||||||| ||||    
T  5936457 cgctgagcttattgattctgttcttgatgttgttaggaaagaagctgaaaacagtgattgcttgcagggta 5936387  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 224 - 430
Target Start/End: Complemental strand, 5923184 - 5922978
Alignment:
Q  224 ttcttatggatcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgc 323  Q
    ||||||||||||||||||| || |||||||| ||| || | ||||| |||| |||| |||||||| | || ||||| || |||||||| ||   ||||||    
T  5923184 ttcttatggatcttgaaccggggactatggacagtgtccggtctggaccgtacggtcagatctttagaccggataactttgtgtttggtcagagtggtgc 5923085  T
Q  324 tggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttg 423  Q
    ||||||||| ||||| ||||| |||||||| ||||| |||||| | ||||| |||||||||||||||||| | |||||||| ||||||||||||||||||    
T  5923084 tggtaataactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttg 5922985  T
Q  424 caaggta 430  Q
    || ||||    
T  5922984 cagggta 5922978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 172 - 430
Target Start/End: Complemental strand, 38179035 - 38178777
Alignment:
Q  172 atcaatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtc 271  Q
    |||||||| |||||||||||||||  ||||||||| || |||||  | || || |||||||||||||||||||| || |||||     |  | || ||||    
T  38179035 atcaatgtctattacaatgaagctggtggtggaagatacgttccacgcgccgtgcttatggatcttgaacctggaaccatggattcgcttcgttccggtc 38178936  T
Q  272 cgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgat 371  Q
    |||| ||  |||||||||| || ||||| ||||| || || || || ||||| || ||||||||||| ||||||||||| |||||||| |||||||||||    
T  38178935 cgtttggccagatctttcgaccggataacttcgttttcggtcagtccggtgccggaaataattgggcgaaaggtcattacaccgaaggcgctgagttgat 38178836  T
Q  372 tgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta 430  Q
    ||| || ||| | ||||||||  | ||||| || |||||||| ||||||||||||||||    
T  38178835 tgattccgttttggatgttgtgaggaaagaggctgagaattgcgattgcttgcaaggta 38178777  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 5530449 - 5530525
Alignment:
Q  49 caaggtggccaatgcggtaaccaaattggatccaaattctgggaggtgatatgcgacgaacatggcattgatccaac 125  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||| | || |  |||||||| || ||||||||    
T  5530449 caaggtggccaatgcggtaaccaaatcggagccaaattctgggaagtggtttgtgctgaacatggaatcgatccaac 5530525  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 5923355 - 5923310
Alignment:
Q  47 ttcaaggtggccaatgcggtaaccaaattggatccaaattctggga 92  Q
    |||||||||||||||||||||||||||| ||| | |||||||||||    
T  5923355 ttcaaggtggccaatgcggtaaccaaatcggagcaaaattctggga 5923310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 38179173 - 38179091
Alignment:
Q  28 atgagagagatcttgcacgttcaaggtggccaatgcggtaaccaaattggatccaaattctgggaggtgatatgcgacgaaca 110  Q
    |||||||| ||| | ||| | ||||| || |||||||||||||| || ||| ||||||||||||| || || |||||||||||    
T  38179173 atgagagaaatcctccacatccaaggcgggcaatgcggtaaccagatcggagccaaattctgggaagttatctgcgacgaaca 38179091  T

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Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 175 - 430
Target Start/End: Complemental strand, 40919811 - 40919556
Alignment:
Q  175 aatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtccgt 274  Q
    |||||||| |||||||||||   ||||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||| |  | |||||||| |    
T  40919811 aatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccat 40919712  T
Q  275 tcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattga 374  Q
    | || || || ||| | |||||||| || ||||||||||||  ||| ||||||||||||||||| ||||| ||||| || ||||| |||||  | |||||    
T  40919711 ttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattga 40919612  T
Q  375 ctctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta 430  Q
     |||||||||||||||||||| |||||||| |||||||| || |||||||||||||    
T  40919611 ttctgttcttgatgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta 40919556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 307 - 431
Target Start/End: Original strand, 45319382 - 45319506
Alignment:
Q  307 tttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcag 406  Q
    |||||||| |||||||| || || ||||  ||||| |||||||| || || ||||| ||| | ||||||| |||||||||||||||  | || || |  |    
T  45319382 tttggacagtctggtgccggaaacaatttcgccaagggtcattacactgagggtgccgagctcattgactttgttcttgatgttgtaaggaaggaggttg 45319481  T
Q  407 agaattgtgattgcttgcaaggtaa 431  Q
    |||||||||||||||||||||||||    
T  45319482 agaattgtgattgcttgcaaggtaa 45319506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 173 - 419
Target Start/End: Complemental strand, 45454678 - 45454432
Alignment:
Q  173 tcaatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtcc 272  Q
    |||||||||| ||||| |||||   | ||||||| |  ||||||||||| ||||| |||||||| || || || |||||||| ||  |||||||||||||    
T  45454678 tcaatgtgtactacaacgaagcgagttgtggaagattcgttcctagagctgttctcatggatctggagccagggactatggatagcgtcagatctggtcc 45454579  T
Q  273 gttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgatt 372  Q
     | |||| |||| || || |||||||| || || |||||||| || ||||| || || || ||||| |||||||| ||||| ||||| ||||||||||||    
T  45454578 atacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgatt 45454479  T
Q  373 gactctgttcttgatgttgttcgtaaagaagcagagaattgtgattg 419  Q
    || || || |||||||||||  | || || || ||||||||||||||    
T  45454478 gattcggtgcttgatgttgtcaggaaggaggctgagaattgtgattg 45454432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 34839810 - 34839953
Alignment:
Q  276 cggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgac 375  Q
    |||| ||||||| ||||||||||| ||||| || || || || || || ||||| |||||||| ||||||||||| || ||||| |||||  | |||||     
T  34839810 cggtcagatcttccgtcctgataacttcgttttcggtcagtccggcgccggtaacaattgggcgaaaggtcattacactgaaggcgctgaacttattgat 34839909  T
Q  376 tctgttcttgatgttgttcgtaaagaagcagagaattgtgattg 419  Q
    || ||||| |||||||||||||||||||| |||||||| |||||    
T  34839910 tcagttctcgatgttgttcgtaaagaagctgagaattgcgattg 34839953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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