View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5086-Insertion-6 (Length: 659)
Name: NF5086-Insertion-6
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086-Insertion-6 |
 | |
|
| [»] chr4 (9 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 614; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 6 - 659
Target Start/End: Complemental strand, 27003758 - 27003104
Alignment:
| Q |
6 |
catgggctacattggcatcccaagtatgccgaacaaactcatatgcattatgttgtcgataatgaattagggttgtaggcacataactatgtaaatatta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27003758 |
catgggctacattggcatcccaagtatgccgaacaaactcatatgcattatgttgtcgataatgaattagggttgtaggcacataactatgtaaatatta |
27003659 |
T |
|
| Q |
106 |
tattttgtattaagcttattaattaggccgttgaattaaagtttctatatattcagattagtgtttgtacttttcacataaatttaataatacttcagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27003658 |
tattttgtattaagcttattaattaggccgttgaattaaagtttctatatattcagattagtgtttgtacttttcacataaatttaataatacttcagaa |
27003559 |
T |
|
| Q |
206 |
tatttttccacacatcataattaattaatggtatcatatatgggtttgcctattttcaatgcactaaaataatcaacgtgcactgattttcaggtcgttg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27003558 |
tatttttccacacatcataattaattaatggtatcgtatatgggtttgcctattttcaatgcactaaaataatcaacgtgcactgattttcaggtcgttg |
27003459 |
T |
|
| Q |
306 |
ctgcgtatatgatgagccaagctctaaatgagaagggatacaatgcatttgccttcaccattccttcagggaaggaatttctgtcaatattaagtcttgc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27003458 |
ctgcgtatatgatgagccaagctctaaatgagaagggatacaatgcatttgccttcaccattccttcagggaaggaatttctgtcaatattaagtcttgc |
27003359 |
T |
|
| Q |
406 |
tgctcctgtatttgttacattgatgttaaaggttgaatcaagtattttgctatgtttgtagcnnnnnnnctcgagtagtgtaacctttaaatattactga |
505 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27003358 |
tgctcctgtatttgtgacattgatgttaaaggttgaatcaagtattttgctatgtttgtagctctttatctcgagtagtgtaacctttaaatattactga |
27003259 |
T |
|
| Q |
506 |
aaattctgatgtttgat-gtttaggtggctttctactctctacttatatattttgctacatcaatgggtacaaataaaatggctgctcatcaagttagtt |
604 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27003258 |
aaattctgatgtttgatggtttaggtggctttctactctctacttatatattttgctacatcaatgggtacaaataaaatggctgctcatcaagttagtt |
27003159 |
T |
|
| Q |
605 |
ttactcctgtcttgtattttgtaactctattccttccctgtctatcacattttct |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27003158 |
ttactcctgtcttgtattttgtaactctattccttcgctgtctatcacattttct |
27003104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 108 - 639
Target Start/End: Complemental strand, 26988876 - 26988351
Alignment:
| Q |
108 |
ttttgtattaagcttattaattaggccgttgaattaaagtttctatatattcagattagtgtttgta-----cttttcacataaatttaataatacttca |
202 |
Q |
| |
|
|||||||||||||||| |||||||||| | || |||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
26988876 |
ttttgtattaagcttactaattaggccat-gagttaaagcttctatat--tcagattagtgtttgtactgttctgttcacatgaatttaataatacttca |
26988780 |
T |
|
| Q |
203 |
gaatatttttccacacatcataattaattaatggtatcatatatgggtttgcctattttcaatgcactaaaataatcaacgtgcactgattttcaggtcg |
302 |
Q |
| |
|
|| |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26988779 |
aaagattttt-cacacatcataattaatcaatggtatcatatatggttttgcctattttcaatgtactaaaataatcaacgtgcactgcttttcaggtcg |
26988681 |
T |
|
| Q |
303 |
ttgctgcgtatatgatgagccaagctctaaatgagaagggatacaatgcatttgccttcaccattccttcagggaaggaatttctgtcaatattaagtct |
402 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26988680 |
ttgctgcgtatatgatgagcaaagctctaaatgagaagggatacaatgcattttccttcaccattccttcagggaaggaatttctgtcaatatttagtct |
26988581 |
T |
|
| Q |
403 |
tgctgctcctgtatttgttacattgatgttaaaggttgaatcaagtattttgctatgtttgtagcnnnnnnnctcgagtagtgtaacctttaaatattac |
502 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||| || |
|
|
| T |
26988580 |
tgctgctcctgtatttgtgacattgatgttaaaggttgaatcaagtattttgctatatttctagctctttatctcgagtagaataacctttaaatataac |
26988481 |
T |
|
| Q |
503 |
tgaaaattctgatgtttgatgtttaggtggctttctactctctacttatatattttgctacatcaatgggtacaaataaaatggctgctcatcaagttag |
602 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26988480 |
tgaaagttc-------tgatgtgtaggtggctttctactctctaattatatattttgctacatcaatgggtacaaataaaatagctgctcatcaagttag |
26988388 |
T |
|
| Q |
603 |
ttttactcctgtcttgtattttgtaactctattcctt |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26988387 |
ttttactcctgtcttgtattttgtaactctattcctt |
26988351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 292 - 625
Target Start/End: Original strand, 26978772 - 26979098
Alignment:
| Q |
292 |
ttttcaggtcgttgctgcgtatatgatgagccaagctctaaatgagaagggatacaatgcatttgccttcaccattccttcagggaaggaatttctgtca |
391 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||| |||||| ||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
26978772 |
ttttcaggttgttgcttcatatatgatgagccaaactctaatcaagaagggatacaaggcattttccttctccattccttcggggaaggaatttctgtca |
26978871 |
T |
|
| Q |
392 |
atattaagtcttgctgctcctgtatttgttacattgatgttaaaggttgaatcaagtattttgctatgtttgtagcnnnnnnnctcgagtagtgtaacct |
491 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| ||||||||||||||| || ||||||| ||| ||||| || || ||||||| |||||| |
|
|
| T |
26978872 |
atatttagtcttgcagctcctgtatttgtctcattggtgttaaaggttgaataaaatattttgttatatttgtggctctttttcttgagtagtttaacct |
26978971 |
T |
|
| Q |
492 |
ttaaatattactgaaaattctgatgtttgatgtttaggtggctttctactctctacttatatattttgctacatcaatgggtacaaataaaatggctgct |
591 |
Q |
| |
|
|||||| | || | || | |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
26978972 |
ttaaatgtaacgggaagt-------tttgatgtttagatggctttctatgctctacttgtatattttgctacatcaatgggtacacatacaacggctgct |
26979064 |
T |
|
| Q |
592 |
catcaagttagttttactcctgtcttgtattttg |
625 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |
|
|
| T |
26979065 |
catcaagttagttttacttttgccttgtattttg |
26979098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 26989162 - 26989065
Alignment:
| Q |
6 |
catgggctacattggcatcccaagtatgccgaacaaactcatatgcattatgttgtcgataatgaattagggttgtaggcacataactatgtaaatatt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
26989162 |
catgggctacattggcatcccaagtatgccgaacaaacttatatgcattacgttgtaaacaagtaattagggttgtaggcacat-actatgtaaatatt |
26989065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 521 - 609
Target Start/End: Complemental strand, 26943832 - 26943744
Alignment:
| Q |
521 |
atgtttaggtggctttctactctctacttatatattttgctacatcaatgggtacaaataaaatggctgctcatcaagttagttttact |
609 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
26943832 |
atgtttaggtggctttctactccttgctaatatattttgcaacatcaatgggtacacatacaatggctgctcatcaagttagttttact |
26943744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 519 - 612
Target Start/End: Complemental strand, 26951569 - 26951476
Alignment:
| Q |
519 |
tgatgtttaggtggctttctactctctacttatatattttgctacatcaatgggtacaaataaaatggctgctcatcaagttagttttactcct |
612 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| | | |||||| |||||||||||| |||| |||||| |
|
|
| T |
26951569 |
tgatgttcaggtggctttcttttctctacttatatatgttgctacatcaatgggtacacaaacaatggccgctcatcaagtttgtttcactcct |
26951476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 26951730 - 26951654
Alignment:
| Q |
340 |
gggatacaatgcatttgccttcaccattccttcagggaaggaatttctgtcaatattaagtcttgctgctcctgtat |
416 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||| | || ||||||||||| |||| |
|
|
| T |
26951730 |
gggatataatgcatttgccttctccattccttcaatgaaggaatttctgacaatacttagccttgctgctccagtat |
26951654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 26978653 - 26978732
Alignment:
| Q |
199 |
ttcagaatatttttccacacatcataattaattaatggtatcatatatgggtttgcctattttcaatgcactaaaataat |
278 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| |||||||||| | || |||||||||||| ||| ||||||| |
|
|
| T |
26978653 |
ttcataatatttttccacacatcataattagttaatgctatcatatatcgtttgtcctattttcaatttactgaaataat |
26978732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 26978488 - 26978540
Alignment:
| Q |
8 |
tgggctacattggcatcccaagtatgccgaacaaactcatatgcattatgttg |
60 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| || ||| |||||| |
|
|
| T |
26978488 |
tgggctacattggcatcacaagtatgctaaacaaactcacatacatcatgttg |
26978540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 41641711 - 41641781
Alignment:
| Q |
149 |
tctatatattcagattagtgtttgtacttttcacataaat--ttaataatacttcagaatatttttccaca |
217 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| || | || ||| |||| ||||||||||||||||| |
|
|
| T |
41641711 |
tctatatattcagattagtgtttctactcttcacacaattgatttatagtactacagaatatttttccaca |
41641781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University