View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5086-Insertion-8 (Length: 401)
Name: NF5086-Insertion-8
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086-Insertion-8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 23408563 - 23408821
Alignment:
| Q |
7 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
23408563 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggc |
23408662 |
T |
|
| Q |
107 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
23408663 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagatac |
23408762 |
T |
|
| Q |
207 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
265 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23408763 |
caatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 23453396 - 23453653
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453396 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggct |
23453495 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
23453496 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23453595 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
265 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23453596 |
aatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 23415732 - 23415986
Alignment:
| Q |
7 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggc |
106 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415732 |
agtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggc |
23415831 |
T |
|
| Q |
107 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
23415832 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatac |
23415931 |
T |
|
| Q |
207 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23415932 |
caatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 23868987 - 23868733
Alignment:
| Q |
7 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggc |
106 |
Q |
| |
|
||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23868987 |
agtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggc |
23868888 |
T |
|
| Q |
107 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868887 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
23868788 |
T |
|
| Q |
207 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23868787 |
caatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 24307477 - 24307224
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24307477 |
gtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggct |
24307378 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307377 |
tcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
24307278 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
24307277 |
aatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 23402328 - 23402071
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402328 |
gtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggct |
23402229 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
23402228 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23402129 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca |
265 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23402128 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 23886081 - 23885828
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23886081 |
gtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggct |
23885982 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
23885981 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23885882 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23885881 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 26832986 - 26832736
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26832986 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26832887 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26832886 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26832787 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26832786 |
gtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 26434275 - 26434025
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26434275 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26434176 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26434175 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26434076 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
|||||| |||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26434075 |
gtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 26436055 - 26435805
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26436055 |
acagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26435956 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26435955 |
tgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26435856 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26435855 |
gtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 34662068 - 34662318
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||||| ||||| || || ||||||| |
|
|
| T |
34662068 |
acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttct |
34662167 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
210 |
Q |
| |
|
|||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
34662168 |
tgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaat |
34662267 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
||| ||||||||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
34662268 |
gtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
40 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
139 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
140 |
tgagcaagcttctcgaagatatcattgatgaaa |
172 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 305 - 401
Target Start/End: Complemental strand, 23402031 - 23401935
Alignment:
| Q |
305 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23402031 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttct |
23401935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 299 - 401
Target Start/End: Complemental strand, 24307186 - 24307084
Alignment:
| Q |
299 |
gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt |
398 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
399 |
tct |
401 |
Q |
| |
|
||| |
|
|
| T |
24307086 |
tct |
24307084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 26832701 - 26832596
Alignment:
| Q |
296 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
395 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26832701 |
ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26832602 |
T |
|
| Q |
396 |
gtttct |
401 |
Q |
| |
|
|||||| |
|
|
| T |
26832601 |
gtttct |
26832596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 23408861 - 23408957
Alignment:
| Q |
305 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23408861 |
gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttct |
23408957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 401
Target Start/End: Original strand, 23416018 - 23416123
Alignment:
| Q |
296 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
23416018 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg |
23416117 |
T |
|
| Q |
396 |
gtttct |
401 |
Q |
| |
|
|||||| |
|
|
| T |
23416118 |
gtttct |
23416123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 23868698 - 23868593
Alignment:
| Q |
296 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
395 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868698 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg |
23868599 |
T |
|
| Q |
396 |
gtttct |
401 |
Q |
| |
|
|||||| |
|
|
| T |
23868598 |
gtttct |
23868593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 26433990 - 26433885
Alignment:
| Q |
296 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
395 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26433990 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26433891 |
T |
|
| Q |
396 |
gtttct |
401 |
Q |
| |
|
|||||| |
|
|
| T |
26433890 |
gtttct |
26433885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 26435770 - 26435665
Alignment:
| Q |
296 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
395 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26435770 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26435671 |
T |
|
| Q |
396 |
gtttct |
401 |
Q |
| |
|
|||||| |
|
|
| T |
26435670 |
gtttct |
26435665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 23885793 - 23885688
Alignment:
| Q |
296 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
395 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23885793 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg |
23885694 |
T |
|
| Q |
396 |
gtttct |
401 |
Q |
| |
|
|||||| |
|
|
| T |
23885693 |
gtttct |
23885688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 34662359 - 34662458
Alignment:
| Q |
302 |
gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
401 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34662359 |
gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct |
34662458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 23453696 - 23453789
Alignment:
| Q |
308 |
ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
401 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
23453696 |
ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttct |
23453789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 41670651 - 41670401
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| ||||||||||| ||||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
41670552 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
210 |
Q |
| |
|
||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
41670551 |
tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
41670452 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
||| || ||||| || || || || ||||| |||||||||||||| ||||| |
|
|
| T |
41670451 |
gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 33216699 - 33216594
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33216699 |
gtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtgattgttggct |
33216600 |
T |
|
| Q |
108 |
tcttgt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
33216599 |
tcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 40795999 - 40795767
Alignment:
| Q |
32 |
acagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctgg |
131 |
Q |
| |
|
||||| |||||||| | ||| || |||||||| || | || ||||||||||| || | || ||||| || || ||||||||||| ||||| ||||||| |
|
|
| T |
40795999 |
acagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctgg |
40795900 |
T |
|
| Q |
132 |
atgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcag |
231 |
Q |
| |
|
||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| |||||||| || ||||| || || || |
|
|
| T |
40795899 |
atgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgag |
40795800 |
T |
|
| Q |
232 |
tactttgaatatgtagatcttgtatgtttctac |
264 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| |
|
|
| T |
40795799 |
aaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || |||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct |
29391618 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
210 |
Q |
| |
|
||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| || |
|
|
| T |
29391617 |
tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat |
29391518 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
|| || ||||| ||||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
29391517 |
atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
133 |
tgattcttgagcaagcttctcgaagatatcattgatg |
169 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 40180297 - 40180547
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||| |
|
|
| T |
40180297 |
acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct |
40180396 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
210 |
Q |
| |
|
|||| || | ||| | | || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || |
|
|
| T |
40180397 |
tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgat |
40180496 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
|| || ||||| |||||||| || ||||| ||||| |||||||| ||||| |
|
|
| T |
40180497 |
atcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 47317536 - 47317431
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
47317536 |
gtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttcccttgaagtgattgttggct |
47317437 |
T |
|
| Q |
108 |
tcttgt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
47317436 |
tcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
133 |
tgattcttgagcaagcttctcgaagatatcattgatg |
169 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
| Q |
26 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
78 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
136 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact |
235 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || || |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
236 |
ttgaatatgtagatcttgtatgtttc |
261 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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