View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086-Insertion-9 (Length: 336)
Name: NF5086-Insertion-9
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 4176581 - 4176253
Alignment:
| Q |
8 |
tcaacgttatactcctatcaaacacaaacagaattgaacatcatggctacaacaacttcgtcttttatgtttcttaaacgaattcttacatcatcgcctt |
107 |
Q |
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| T |
4176581 |
tcaacgttatactcctatcaaacacaaacagaattgaacatcatggctacaacaacttcgtcttttatgtttcttaaacgaattcttacatcatcgcctt |
4176482 |
T |
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| Q |
108 |
gtcgtgccagaattggatccctcagatattccaaattaacaatcaaggctcaatcttctgatgtcagaaaggaacatgttgtaatcgtgggtggtgggat |
207 |
Q |
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| T |
4176481 |
gtcgtgccagaattggatccctcagatattccaaattaacaatcaaggctcaatcttctgatgtcagaaaggaacatgttgtaatcgtgggtggtgggat |
4176382 |
T |
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| Q |
208 |
agcaggccttgcaactgcactatcccttcacaggtttcaactctagttcctcaatctattatttatccaccatcatcactttaatgataacactttattc |
307 |
Q |
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| T |
4176381 |
agcaggccttgcaactgcactatcccttcacaggtttcaactctagttcctcaatctattatttatccaccatcatcactctaatgataacactttattc |
4176282 |
T |
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| Q |
308 |
attgtttaattttcaggcttggtgttcgg |
336 |
Q |
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| T |
4176281 |
attgtttaatttccaggcttggtgttcgg |
4176253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 253
Target Start/End: Complemental strand, 4172341 - 4172199
Alignment:
| Q |
105 |
cttgtcgtgccagaattggatccctcagatattccaaattaacaatcaaggctcaatcttctgatgtcagaaaggaacatgttgtaatcgtgggtggtgg |
204 |
Q |
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| T |
4172341 |
cttgtcataccagaattggatctctcagaagttccaaattaa---tcaaggttcaatcttcag---tccaaaaggaacatgttgtcattgtgggtggtgg |
4172248 |
T |
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| Q |
205 |
gatagcaggccttgcaactgcactatcccttcacaggtttcaactctag |
253 |
Q |
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| T |
4172247 |
cattgcaggccttgcaactgctctatcccttcacaggtttcaactctag |
4172199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 4172413 - 4172358
Alignment:
| Q |
24 |
atcaaacacaaacagaattgaacat---catggctacaacaacttcgtcttttatg |
76 |
Q |
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| T |
4172413 |
atcaaacacaatctgaattgaacatgtccatggctacaacaacctcgtcttttatg |
4172358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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