View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_12 (Length: 416)
Name: NF5086_high_12
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 37338999 - 37339390
Alignment:
| Q |
20 |
acattaacccacctcaatgtaccttggaaatagaagggtgttctgatgattttgaatctatttcggaagatagatttaacaacattgcatgtaacacatc |
119 |
Q |
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| T |
37338999 |
acattaacccacctcaatgtaccttggaaatagaaaggtgttctgatgattttgaatctatttcggaagatagatttaacaacatggcatgcaacacatc |
37339098 |
T |
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| Q |
120 |
aagggaacatgacaatttctttcacctgaacctgcttagtgataaactggacagcatggatgacaattgctgttcttcaaattattatacaattcctggc |
219 |
Q |
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| T |
37339099 |
aagggaacatgacaatttctttcacctgaacctgcttagtgataaactggacagcatggatgacaattgctgttcttcaaattattatacaattcctggc |
37339198 |
T |
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| Q |
220 |
atgaatcagcaacttcaggtctctctcatttcttttattttgtcaattactcattttcatttgttacggatatgatttaaagttttaagtatcaaacata |
319 |
Q |
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| T |
37339199 |
atgaatcagcaacttcaggtctctctcatttcttttattttgtcaattactcattttcatttgttacggatatgatttaaagttttaagtatcaaacata |
37339298 |
T |
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| Q |
320 |
gtatattatccttggcaactttctgacatcaattagtcaaagagatgaggaggacactcatcatgcttttattactcaaccattcttctctc |
411 |
Q |
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| T |
37339299 |
gtatattatccttggcaacttcctgacatcaattagtcaaagagatgaggaggacactcatcatgcttttattactcaaccattcttctctc |
37339390 |
T |
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