View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_14 (Length: 379)
Name: NF5086_high_14
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 3636184 - 3636533
Alignment:
| Q |
17 |
catacttgtcttaagacttatagcatgatcttacaaaaccaagatgttaaccaaaactgtaattcgacaccactttcaactaaccaaagtgatattgctg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636184 |
catacttgtcttaagacttatagcatgatcttacaaaaccaagatgttaaccaaaactgtaattcgacaccactttcaactaaccaaagtgatattgctg |
3636283 |
T |
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| Q |
117 |
ctgcatctttgggaacaagggtttcagagtctccctctgcattcgagcattcaaatgaaaacaaaaatgaagtaaatcatctacatttgattgatcaaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3636284 |
ctgcatctttgggaacaagggtttcagagtctccctctgcattcgagcattcaaatgaaaacaaaaatgaagtaaatcatcaacatttgattgatcaaaa |
3636383 |
T |
|
| Q |
217 |
gtcaattatacaaataaccgatgacaagagtgatgagttaaaagcctcagaactgacacatgagaggaggtcacctattaatctaaaccataggacacgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636384 |
gtcaattatacaaataaccgatgacaagagtgatgagttaaaagcctcagaactgacacatgagaggaggtcacctattaatctaaaccataggacacgc |
3636483 |
T |
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| Q |
317 |
caccgcttactgggtcctaaaacttctgtaaatgatatcagtatagagaa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636484 |
caccgcttactgggtcctaaaacttctgtaaatgatatcagtatagagaa |
3636533 |
T |
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