View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_16 (Length: 358)
Name: NF5086_high_16
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 16489707 - 16489825
Alignment:
| Q |
1 |
aacattgaaacggtcagagtaaacaagttgagttagaatttcagcataatagatctaactatacttgatcttggtggccttcttcttagaagttcaacca |
100 |
Q |
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| T |
16489707 |
aacattgaaacggtcagagtaaacaagttgagttagaatttcagcataataggtctaactatacttgatcctggtggccttcttcttagaagttcaacca |
16489806 |
T |
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| Q |
101 |
acacctctgcctttggagg |
119 |
Q |
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| T |
16489807 |
acacctctgcctttggagg |
16489825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 16489907 - 16489996
Alignment:
| Q |
241 |
gtccatgactttatgttatttcgttattttacaccgttgaactatgttttgtacttatttattttttctaatgctattcagcatgagaaccctcc |
335 |
Q |
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| T |
16489907 |
gtccatgactttatgttatttcgttattttaca-cgttgaactatgtt---tacttaatt-ttttttctaatgctattcatcatgagaaccctcc |
16489996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 16489862 - 16489912
Alignment:
| Q |
116 |
gaggatgggtcatttacatacaattttgtaccaataacctc-tatgtccat |
165 |
Q |
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| T |
16489862 |
gaggatgggtcatttacatacaattttgtaccaataacctcttatgtccat |
16489912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 25747100 - 25747155
Alignment:
| Q |
128 |
tttacatacaattttgtaccaataacctctatgtccat-aaataagtccctgaatc |
182 |
Q |
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| T |
25747100 |
tttacatataattttgtaccaataatttctatgtccataaaataagtccctgaatc |
25747155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 25733227 - 25733284
Alignment:
| Q |
129 |
ttacatacaattttgtaccaataacctctatgtccat-aaataagtccctgaatcttt |
185 |
Q |
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||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
25733227 |
ttacatataattttgtaccaataatttctatgtccgtaaaataagtccctgaatcttt |
25733284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 25755713 - 25755754
Alignment:
| Q |
211 |
gtccctgaatctttatttggctcaactatagtccatgacttt |
252 |
Q |
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| T |
25755713 |
gtccctgaatccttatctggctcaactatagtccatgacttt |
25755754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 25740928 - 25740982
Alignment:
| Q |
129 |
ttacatacaattttgtaccaataacctctatgtccat-aaataagtccctgaatc |
182 |
Q |
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||||||| |||||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
25740928 |
ttacatataattttgtaccaataatttctatgtccgtaaaataagtccctgaatc |
25740982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 25733271 - 25733312
Alignment:
| Q |
211 |
gtccctgaatctttatttggctcaactatagtccatgacttt |
252 |
Q |
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|||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
25733271 |
gtccctgaatctttatctggttcaactatagtccacgacttt |
25733312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 25740972 - 25741013
Alignment:
| Q |
211 |
gtccctgaatctttatttggctcaactatagtccatgacttt |
252 |
Q |
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| T |
25740972 |
gtccctgaatccttatctgactcaactatagtccatgacttt |
25741013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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