View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086_high_17 (Length: 345)

Name: NF5086_high_17
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086_high_17
NF5086_high_17
[»] chr6 (8 HSPs)
chr6 (38-324)||(27311074-27311374)
chr6 (38-324)||(27577674-27577972)
chr6 (38-307)||(27581976-27582268)
chr6 (45-210)||(27313328-27313492)
chr6 (254-307)||(27311039-27311092)
chr6 (254-324)||(27577619-27577692)
chr6 (254-297)||(27577594-27577637)
chr6 (105-181)||(23591510-23591586)
[»] chr2 (3 HSPs)
chr2 (128-181)||(10862310-10862363)
chr2 (128-181)||(44266355-44266408)
chr2 (144-225)||(31761152-31761232)
[»] chr8 (1 HSPs)
chr8 (105-168)||(39588147-39588210)
[»] chr3 (3 HSPs)
chr3 (126-181)||(9178909-9178964)
chr3 (133-181)||(40926790-40926838)
chr3 (137-181)||(44367592-44367636)
[»] chr4 (2 HSPs)
chr4 (144-181)||(5427148-5427185)
chr4 (126-223)||(52810631-52810727)
[»] chr5 (2 HSPs)
chr5 (144-180)||(5095944-5095980)
chr5 (128-184)||(30329840-30329896)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 27311374 - 27311074
Alignment:
Q  38 aaaaaggaacggagggagtaccagtttgatttttagggcccacacgttggtttgcagaagataggaatgttagcagcaaatacacagtgaatttagtccc 137  Q
    |||||||||||||||||| |||||||||||||||||| ||| ||| ||| ||| |||||||||||||||||||| || || ||||||||||||||||| |    
T  27311374 aaaaaggaacggagggagcaccagtttgatttttaggccccccacattgttttacagaagataggaatgttagcggccaacacacagtgaatttagtcgc 27311275  T
Q  138 ataacagatagataagattttttagaagagtttatatagaggaggaaactcctcgttttacaagttgattttacaaagatgagttaggttccataattcg 237  Q
    | ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  27311274 acaacggatagataagattcttgagaagagtttatatagaggaggaaactcctcgttttacaagttggttttataaagatgagttaggttccataattcg 27311175  T
Q  238 c--------------agttgtttgatttgtaagtctaaatttctaaatatcatcatttctttttccaacctttatgattaaaaagtctaaatttctaaat 323  Q
    |              || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27311174 cagcattacttattaagctgtttgatttgtaagtctaaatttctaaatatcatcatttctttttccaacctttatgactaaaaagtctaaatttctaaat 27311075  T
Q  324 a 324  Q
    |    
T  27311074 a 27311074  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 27577972 - 27577674
Alignment:
Q  38 aaaaaggaacggagggagtaccagtttgatttttagggcccacacgttggtttgcagaagataggaatgttagcagcaaatacacagtgaatttagtccc 137  Q
    ||||||||| |||||||||| |||||||||||||||||||  ||| ||| ||| ||||||||||||||||||||||| ||  ||||||| ||||||||||    
T  27577972 aaaaaggaatggagggagtatcagtttgatttttagggccaccacattgttttacagaagataggaatgttagcagccaa--cacagtggatttagtccc 27577875  T
Q  138 ataacagatagataagattttttagaagagtttatatagaggaggaaactcctcgttttacaagttgattttacaaagatgagttaggttccataattcg 237  Q
    | ||| ||||||||||||| || |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27577874 acaacggatagataagattcttgagaagagtttatattgaggaggaaacttctcgttttacaagttgattttataaagatgagttaggttccataattcg 27577775  T
Q  238 c--------------agttgtttgatttgtaagtctaaatttctaaatatcatcatttctttttccaacctttatgattaaaaagtctaaatttctaaat 323  Q
    |              || | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27577774 cagcattacttattaagctatttgatttgtaagtgtaaatttttaaatatcatcatttctttttccaacctttatgactaaaaagtctaaatttctaaat 27577675  T

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Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 38 - 307
Target Start/End: Complemental strand, 27582268 - 27581976
Alignment:
Q  38 aaaaaggaacggagggagtaccagtttgatttt---------tagggcccacacgttggtttgcagaagataggaatgttagcagcaaatacacagtgaa 128  Q
    |||||||||||||||||| ||||||||||||||         |||| ||| ||| ||| ||| || |||||||||||||||||||| || |||||||| |    
T  27582268 aaaaaggaacggagggagcaccagtttgatttttaggatttttaggccccccacattgttttacaaaagataggaatgttagcagccaaaacacagtgga 27582169  T
Q  129 tttagtcccataacagatagataagattttttagaagagtttatatagaggaggaaactcctcgttttacaagttgattttacaaagatgagttaggttc 228  Q
    |||||||||| ||| ||||||||| ||| || ||||||||||||||| || |||||||||||||||||| || ||||||||| |||||||||||||||||    
T  27582168 tttagtcccacaacggatagataaaattcttgagaagagtttatataaagaaggaaactcctcgttttataaattgattttataaagatgagttaggttc 27582069  T
Q  229 cataattcgcag--------------ttgtttgatttgtaagtctaaatttctaaatatcatcatttctttttccaacctttatgattaaaaa 307  Q
    |||||||| |||               ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27582068 cataattcacagcattacttattaaactgtttgatttgtatgtctaaatttctaaatatcattatttctttttccaacctttatgattaaaaa 27581976  T

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Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 27313492 - 27313328
Alignment:
Q  45 aacggagggagtaccagtttgatttttagggcccacacgttggtttgcagaagataggaatgttagcagcaaatacacagtgaatttagtcccataacag 144  Q
    |||||||||||||| ||||||||||||||||||| ||   | |||| ||||||||||||||||||||||  || ||||| || ||||| ||||| ||| |    
T  27313492 aacggagggagtactagtttgatttttagggccc-catactagtttacagaagataggaatgttagcagacaacacacaatggatttactcccacaacgg 27313394  T
Q  145 atagataagattttttagaagagtttatatagaggaggaaactcctcgttttacaagttgatttta 210  Q
    |||||||||||| || |||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  27313393 atagataagattcttgagaagaatttatgtagaggaggaaactcctcgttttacaagttaatttta 27313328  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 27311092 - 27311039
Alignment:
Q  254 aagtctaaatttctaaatatcatcatttctttttccaacctttatgattaaaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27311092 aagtctaaatttctaaatatcatcatttctttttccaacctttatgattaaaaa 27311039  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 27577692 - 27577619
Alignment:
Q  254 aagtctaaatttctaaatatcatcatttctttttcca---acctttatgattaaaaagtctaaatttctaaata 324  Q
    ||||||||||||||||||| ||||||||||||| |||   |||||||||| |||||||||||||||||||||||    
T  27577692 aagtctaaatttctaaataccatcatttcttttcccaaccacctttatgactaaaaagtctaaatttctaaata 27577619  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 27577637 - 27577594
Alignment:
Q  254 aagtctaaatttctaaatatcatcatttctttttccaaccttta 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27577637 aagtctaaatttctaaatatcatcatttctttttccaaccttta 27577594  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 23591510 - 23591586
Alignment:
Q  105 tgttagcagcaaatacacagtgaatttagtcccataacagatagataagattttttagaagagtttatatagaggag 181  Q
    |||||||||| || || | ||| ||||| ||||| | ||||||||||||||| || |||| |||||||||| |||||    
T  23591510 tgttagcagccaacactcggtggatttaatcccacatcagatagataagattcttgagaaaagtttatataaaggag 23591586  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 10862310 - 10862363
Alignment:
Q  128 atttagtcccataacagatagataagattttttagaagagtttatatagaggag 181  Q
    ||||||||||| | | |||||||||||||||||||||||||||||| |||||||    
T  10862310 atttagtcccacatcggatagataagattttttagaagagtttataaagaggag 10862363  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 44266408 - 44266355
Alignment:
Q  128 atttagtcccataacagatagataagattttttagaagagtttatatagaggag 181  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||| |||||||    
T  44266408 atttagtcccacatcagatagataagatttttgagaagagtttataaagaggag 44266355  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 31761152 - 31761232
Alignment:
Q  144 gatagataagattttttagaagagtttatatagaggaggaaactcctcgttttacaagttgattttacaaagatgagttagg 225  Q
    ||||||||||| |||| ||||||||||||||||| |||| || |||||   |||||||||| ||||  || |||||||||||    
T  31761152 gatagataagacttttgagaagagtttatatagaagaggcaa-tcctcaccttacaagttggttttgtaaggatgagttagg 31761232  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 39588210 - 39588147
Alignment:
Q  105 tgttagcagcaaatacacagtgaatttagtcccataacagatagataagattttttagaagagt 168  Q
    |||||||||| || || || || ||||||||||| |||||||||||| ||||||| ||||||||    
T  39588210 tgttagcagccaacactcaatggatttagtcccacaacagatagataggatttttgagaagagt 39588147  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 9178909 - 9178964
Alignment:
Q  126 gaatttagtcccataacagatagataagattttttagaagagtttatatagaggag 181  Q
    ||||||||||||||| | |||||||| |||| || ||||||||||||| |||||||    
T  9178909 gaatttagtcccatatcggatagataggattcttaagaagagtttataaagaggag 9178964  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 40926790 - 40926838
Alignment:
Q  133 gtcccataacagatagataagattttttagaagagtttatatagaggag 181  Q
    |||||||| ||||||||||||| | || | |||||||||||||||||||    
T  40926790 gtcccatatcagatagataagactcttgataagagtttatatagaggag 40926838  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 44367592 - 44367636
Alignment:
Q  137 cataacagatagataagattttttagaagagtttatatagaggag 181  Q
    |||| ||||||||||||| | || |||||||||||||||||||||    
T  44367592 catatcagatagataagactcttgagaagagtttatatagaggag 44367636  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 5427148 - 5427185
Alignment:
Q  144 gatagataagattttttagaagagtttatatagaggag 181  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  5427148 gatagataagatttttgagaagagtttataaagaggag 5427185  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 52810727 - 52810631
Alignment:
Q  126 gaatttagtcccataacagatagataagattttttagaagagtttatatagaggaggaaactcctcgttttacaagttgattttacaaagatgagtta 223  Q
    ||||||||||| | | | ||||||||||||| || ||||||||||||| |||||| || |||||||    ||||||||||||||| |  |||||||||    
T  52810727 gaatttagtcctacatcggatagataagattcttgagaagagtttataaagagga-gacactcctcaccgtacaagttgattttatatggatgagtta 52810631  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 5095980 - 5095944
Alignment:
Q  144 gatagataagattttttagaagagtttatatagagga 180  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  5095980 gatagataggattttttagaagagtttataaagagga 5095944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 30329840 - 30329896
Alignment:
Q  128 atttagtcccataacagatagataagattttttagaagagtttatatagaggaggaa 184  Q
    ||||||||||| | | |||||||| |||| || ||||||||||||| ||||||||||    
T  30329840 atttagtcccacatcggatagataggattcttgagaagagtttataaagaggaggaa 30329896  T

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