View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086_high_2 (Length: 620)

Name: NF5086_high_2
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086_high_2
NF5086_high_2
[»] chr7 (20 HSPs)
chr7 (323-611)||(10975300-10975588)
chr7 (89-260)||(10975651-10975822)
chr7 (142-187)||(42957479-42957524)
chr7 (134-186)||(24812933-24812985)
chr7 (172-258)||(2624732-2624819)
chr7 (18-67)||(24478032-24478081)
chr7 (210-258)||(32199961-32200009)
chr7 (176-258)||(20054985-20055068)
chr7 (138-181)||(43393914-43393957)
chr7 (132-194)||(22859367-22859428)
chr7 (138-187)||(1853298-1853347)
chr7 (142-187)||(2936242-2936287)
chr7 (142-187)||(9689343-9689388)
chr7 (18-67)||(10975842-10975891)
chr7 (138-183)||(19377094-19377139)
chr7 (209-258)||(31307978-31308027)
chr7 (209-258)||(31750847-31750896)
chr7 (23-68)||(39580165-39580210)
chr7 (210-258)||(31863910-31863958)
chr7 (23-67)||(39065396-39065440)
[»] chr6 (14 HSPs)
chr6 (450-611)||(8169389-8169550)
chr6 (132-187)||(25167053-25167108)
chr6 (209-260)||(1227802-1227853)
chr6 (131-194)||(3816595-3816658)
chr6 (209-258)||(5460032-5460081)
chr6 (18-67)||(20504410-20504459)
chr6 (209-258)||(34414469-34414518)
chr6 (209-260)||(16659661-16659712)
chr6 (209-260)||(21544256-21544307)
chr6 (177-230)||(32603619-32603673)
chr6 (18-67)||(10546179-10546228)
chr6 (209-258)||(22362746-22362795)
chr6 (209-258)||(34077544-34077593)
chr6 (23-67)||(13114411-13114455)
[»] chr2 (14 HSPs)
chr2 (127-194)||(23381351-23381418)
chr2 (138-195)||(29878836-29878893)
chr2 (138-186)||(42223226-42223274)
chr2 (209-260)||(15543912-15543963)
chr2 (135-257)||(943953-944075)
chr2 (209-258)||(29949683-29949732)
chr2 (138-194)||(31989515-31989571)
chr2 (127-194)||(13499476-13499542)
chr2 (209-259)||(16260636-16260686)
chr2 (18-67)||(26498517-26498566)
chr2 (142-187)||(35791164-35791209)
chr2 (141-185)||(11478106-11478150)
chr2 (138-194)||(31377711-31377767)
chr2 (32-68)||(32449917-32449953)
[»] chr5 (15 HSPs)
chr5 (123-257)||(15885487-15885621)
chr5 (126-194)||(20024144-20024212)
chr5 (141-187)||(13153653-13153699)
chr5 (177-258)||(31312619-31312701)
chr5 (209-258)||(4561802-4561851)
chr5 (142-187)||(15399733-15399778)
chr5 (18-67)||(31567642-31567691)
chr5 (209-260)||(23188764-23188815)
chr5 (209-259)||(6896983-6897033)
chr5 (209-258)||(6117713-6117762)
chr5 (18-67)||(37082274-37082323)
chr5 (209-258)||(38874536-38874585)
chr5 (142-187)||(42779003-42779047)
chr5 (210-258)||(8855525-8855573)
chr5 (20-68)||(10819395-10819443)
[»] chr8 (15 HSPs)
chr8 (138-194)||(24375804-24375860)
chr8 (138-187)||(23289050-23289099)
chr8 (138-186)||(9235488-9235536)
chr8 (142-257)||(12719204-12719320)
chr8 (209-260)||(11830301-11830352)
chr8 (209-258)||(2873576-2873625)
chr8 (212-260)||(25653905-25653953)
chr8 (209-260)||(12478699-12478750)
chr8 (209-260)||(35990745-35990796)
chr8 (18-56)||(12936463-12936501)
chr8 (18-67)||(34227335-34227385)
chr8 (209-258)||(38703796-38703845)
chr8 (209-258)||(41509580-41509629)
chr8 (23-67)||(960497-960541)
chr8 (139-187)||(13373292-13373340)
[»] chr3 (12 HSPs)
chr3 (122-194)||(22438711-22438783)
chr3 (210-258)||(2985697-2985745)
chr3 (141-187)||(17582511-17582557)
chr3 (31-68)||(4658917-4658954)
chr3 (32-68)||(15309105-15309141)
chr3 (138-186)||(55257755-55257803)
chr3 (138-185)||(25124883-25124930)
chr3 (147-194)||(37050173-37050220)
chr3 (139-186)||(45008076-45008123)
chr3 (138-187)||(7308209-7308257)
chr3 (138-187)||(18359346-18359395)
chr3 (145-194)||(30226262-30226311)
[»] scaffold0067 (1 HSPs)
scaffold0067 (138-187)||(25880-25929)
[»] scaffold0003 (1 HSPs)
scaffold0003 (138-194)||(306671-306726)
[»] chr4 (14 HSPs)
chr4 (209-260)||(49166771-49166822)
chr4 (134-187)||(16875984-16876037)
chr4 (138-186)||(8678941-8678989)
chr4 (142-194)||(8810071-8810123)
chr4 (210-258)||(25244559-25244607)
chr4 (209-260)||(39133210-39133261)
chr4 (140-187)||(42161416-42161463)
chr4 (173-258)||(49296163-49296249)
chr4 (138-187)||(9780443-9780492)
chr4 (142-187)||(13555720-13555765)
chr4 (22-67)||(13780413-13780458)
chr4 (209-258)||(42056106-42056155)
chr4 (179-258)||(4102916-4102996)
chr4 (23-67)||(35539780-35539824)
[»] scaffold0002 (1 HSPs)
scaffold0002 (209-258)||(332191-332240)
[»] chr1 (11 HSPs)
chr1 (142-187)||(13437017-13437062)
chr1 (144-194)||(16639595-16639646)
chr1 (141-187)||(17890185-17890231)
chr1 (32-66)||(42086223-42086257)
chr1 (209-258)||(21770882-21770931)
chr1 (209-258)||(22152045-22152094)
chr1 (142-187)||(25059920-25059965)
chr1 (209-258)||(44961133-44961182)
chr1 (177-230)||(44961193-44961246)
chr1 (23-67)||(18458802-18458846)
chr1 (23-67)||(24987621-24987665)
[»] scaffold0022 (1 HSPs)
scaffold0022 (209-260)||(63230-63281)
[»] scaffold0004 (1 HSPs)
scaffold0004 (143-187)||(82347-82391)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 323 - 611
Target Start/End: Complemental strand, 10975588 - 10975300
Alignment:
Q  323 gacctattctttagacggtaaaacactgttaacccatcaaactaattcaactactcatcctaagtgtagttgattaactatacatgaaacatttaaccaa 422  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10975588 gacctattctataggcggtaaaacactgttaacccatcaaactaattcaactactcatcctaagagtagttgattaactatacatgaaacatttaaccaa 10975489  T
Q  423 agatacacttatatataaccaatggatttgtgaaccgcaggcatcgtttgatagtcatgatggtagaaaaagaattgtagatccagtagtgttgacaact 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975488 agatacacttatatataaccaatggatttgtgaaccgcaggcatcgtttgatagtcatgatggtagaaaaagaattgtagatccagtagtgttgacaact 10975389  T
Q  523 tgctgtcaagagtctttaacaattgcaatatctattacaaccaaatgcatatcaccacaatcctcatctcgtccttcttttgatgatgt 611  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10975388 tgctgtcaagagtctttaacaattgcaatatccattacaaccaaatgcatatcaccacaatcctcatctcgtccttcttttgaagatgt 10975300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 89 - 260
Target Start/End: Complemental strand, 10975822 - 10975651
Alignment:
Q  89 tccttgtaatttgaagannnnnnnggttttgcccccttgtaaaatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagt 188  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10975822 tccttgtaatttgaagatttttttggttttgcccccttgtaaaatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagt 10975723  T
Q  189 aaatttatgttcattccctctaatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||| |  |||| ||||||||||||||||||||||  || |||||||||||||||||||||||||    
T  10975722 aaatttatgtttagcccctgtaatttgagcaaatttcggtttaccccctatcatatcatcgattttgtactg 10975651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 42957479 - 42957524
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||| || ||||||||||||||||||||||||||    
T  42957479 catcaaattacaaaatttaaggtactttcgtcccttgtaatttgag 42957524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 24812985 - 24812933
Alignment:
Q  134 ctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttga 186  Q
    ||||| |||||||||||||||||| || ||||||||| |||||||||||||||    
T  24812985 ctttaaggcatcaaattacaaaatttaaggtactttcatcccttgtaatttga 24812933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 2624732 - 2624819
Alignment:
Q  172 tcccttgtaatttgagtaaatttatgttcattccctct-aatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||||||| ||||||  ||| |  |||| | |||||||||||||||| |||| |||||| ||||||| ||||||||||||    
T  2624732 tcccttgtaatttgagcaaattttggtttaccccctgttaatttgagcaaatttcagtttatcctctgtcatatcttcgattttgtac 2624819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 24478032 - 24478081
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    ||||||||||||  |||||||||||| |||||||||||||| ||||||||    
T  24478032 agtgttttaccccctgtaatataggtcatttccggtttttcccctgtaaa 24478081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 32199961 - 32200009
Alignment:
Q  210 aatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||||||||||||  || ||| |||||||||||||||||||    
T  32199961 aatttgagcaaatttcggtttaccccctaccatatcatcgattttgtac 32200009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 20054985 - 20055068
Alignment:
Q  176 ttgtaatttgagtaaatttatgttcattccctc-taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||| ||||||| ||| |  ||||  ||||||||||||||||||||||  ||||| ||||||| || |||||||||    
T  20054985 ttgtaatttgagcaaatttaggtttacccccttgtaatttgagcaaatttcggtttaccctctgtcatatcttcaattttgtac 20055068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 43393957 - 43393914
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaa 181  Q
    |||||||||||||||||||| || |||||||||| |||||||||    
T  43393957 atggcatcaaattacaaaatttaaggtactttcgacccttgtaa 43393914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 22859367 - 22859428
Alignment:
Q  132 atctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    ||||| ||||| |||| ||||||||| |||||||||||||| || ||||||||||| ||||||    
T  22859367 atcttcatggcttcaagttacaaaatttatggtactttcgt-ccatgtaatttgagcaaattt 22859428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 1853347 - 1853298
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    ||||||||||||| |||||| || |||||||||||||| || ||||||||    
T  1853347 atggcatcaaatttcaaaatttaaggtactttcgtcccctgaaatttgag 1853298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 2936242 - 2936287
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||| || |||||||||| ||| |||||||||||    
T  2936242 catcaaattacaaaatttaaggtactttcgccccctgtaatttgag 2936287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 9689343 - 9689388
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||| ||||| || |||||||| |||||||||||||||||    
T  9689343 catcaaattataaaatttaaggtacttttgtcccttgtaatttgag 9689388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 10975891 - 10975842
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    ||||||||||||  ||||||||||||||||| || ||||||||||| |||    
T  10975891 agtgttttaccccctgtaatataggttattttcgatttttctcctgcaaa 10975842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 19377139 - 19377094
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatt 183  Q
    ||||| |||||||||||||| || |||||||||| |||||||||||    
T  19377139 atggcgtcaaattacaaaatttaaggtactttcgccccttgtaatt 19377094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 31308027 - 31307978
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||| || ||  |||||| ||||||||||||    
T  31308027 taatttgagcaaatttcggtttgccccctgccatatcttcgattttgtac 31307978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 31750896 - 31750847
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  || || ||||||| ||||||||||||    
T  31750896 taatttgagcaaatttcggtttaccccctgtcatatcttcgattttgtac 31750847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 39580210 - 39580165
Alignment:
Q  23 tttacccaatgtaatataggttatttccggtttttctcctgtaaat 68  Q
    |||||||  |||||||||||| |||||||||||| |||||||||||    
T  39580210 tttaccccctgtaatataggtcatttccggttttcctcctgtaaat 39580165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 31863910 - 31863958
Alignment:
Q  210 aatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||||||||||||  ||  | ||||||||||||||||||||    
T  31863910 aatttgagcaaatttcggtttaccccttgtcatatcatcgattttgtac 31863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 39065396 - 39065440
Alignment:
Q  23 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||  |||||||||||| |||||||||||||| ||||||||    
T  39065396 tttaccccctgtaatataggtcatttccggtttttcccctgtaaa 39065440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 450 - 611
Target Start/End: Original strand, 8169389 - 8169550
Alignment:
Q  450 ttgtgaaccgcaggcatcgtttgatagtcatgatggtagaaaaagaattgtagatccagtagtgttgacaacttgctgtcaagagtctttaacaattgca 549  Q
    |||||||||  ||||||| ||||  ||||| ||||| |||| ||  ||||| |||||| |||||||||||||||||| |||||| || ||| ||||||||    
T  8169389 ttgtgaaccataggcatcatttggaagtcaagatggaagaagaaagattgtggatccaatagtgttgacaacttgctctcaagaatcattatcaattgca 8169488  T
Q  550 atatctattacaaccaaatgcatatcaccacaatcctcatctcgtccttcttttgatgatgt 611  Q
    |||||||| ||||||||||| ||||| | | | || |||||||||||||||||||| |||||    
T  8169489 atatctataacaaccaaatgtatatctcaagactcttcatctcgtccttcttttgaagatgt 8169550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 25167108 - 25167053
Alignment:
Q  132 atctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||    
T  25167108 atcttcatggcatcaaattacaaaatttaaggtactttcgtcccttgtaatttgag 25167053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 1227853 - 1227802
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||||||    
T  1227853 taatttgagcaaatttcggtttaccccctatcatatcttcgattttgtactg 1227802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 3816595 - 3816658
Alignment:
Q  131 aatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||||| |||||||||||||| ||||| || |||||||||| ||| ||||||||||| ||||||    
T  3816595 aatcttcatggcatcaaattataaaatttaaggtactttcgccccctgtaatttgagaaaattt 3816658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 5460032 - 5460081
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||||||||||||| ||| ||| |||| ||||||||||||||    
T  5460032 taatttgagcaaatttcggtttatcccctaccataacatcgattttgtac 5460081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 20504459 - 20504410
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||||||| ||||||||||||| ||||| |||||||||| ||||||    
T  20504459 agtgttttaccccatgtaatataggtcatttctggtttttctcttgtaaa 20504410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 34414469 - 34414518
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||||||||||    
T  34414469 taatttgagcaaatttcgatttatcctctgtcatatcttcgattttgtac 34414518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 16659661 - 16659712
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || ||| |||||| ||||||||||||||    
T  16659661 taatttgagcaaatttcggtttaccccctaccatatcttcgattttgtactg 16659712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 21544307 - 21544256
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||| | ||||||||||||    
T  21544307 taatttgagcaaatttcggtttaccccctatcatatctttgattttgtactg 21544256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 32603619 - 32603673
Alignment:
Q  177 tgtaatttgagtaaatttatgttcattccct-ctaatttgagcaaatttcggttt 230  Q
    ||||||||||||||||||| ||| |  |||| |||||||||||||||||||||||    
T  32603619 tgtaatttgagtaaatttaggtttacccccttctaatttgagcaaatttcggttt 32603673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 10546228 - 10546179
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    ||||||||||||  |||||||||||| |||| ||||||||| ||||||||    
T  10546228 agtgttttaccctctgtaatataggtcattttcggtttttcccctgtaaa 10546179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 22362795 - 22362746
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  ||  ||||||||| ||||||||||||    
T  22362795 taatttgagcaaatttcggtttaacccttatcatatcttcgattttgtac 22362746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 34077544 - 34077593
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  || ||| |||||| ||||||||||||    
T  34077544 taatttgagcaaatttcggtttaccccctaccatatcttcgattttgtac 34077593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 13114411 - 13114455
Alignment:
Q  23 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||    
T  13114411 tttaccccctgtaatataggtcattttcggtttttctcctgtaaa 13114455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 23381418 - 23381351
Alignment:
Q  127 gtaaaatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  23381418 gtaaaatctttatggcatcaaattacaaaatttatggtactttcgccccttgtaatttgagtaaattt 23381351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 29878836 - 29878893
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattta 195  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| || |||||||    
T  29878836 atggcatcaaattacaaaatttatggtattttcgtcccttgtaatttaagcaaattta 29878893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 42223274 - 42223226
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttga 186  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||    
T  42223274 atggcatcaaattacaaaatttaaggtactttcgccccttgtaatttga 42223226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 15543912 - 15543963
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||||||    
T  15543912 taatttgagcaaatttcggtttaccccctatcatatcttcgattttgtactg 15543963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 943953 - 944075
Alignment:
Q  135 tttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaatttatgttcattccctctaatttgagcaaatttcggtttgtcc 234  Q
    |||| |||||||||||||||||| |||| |||||||||||  ||||||| ||| ||||||  ||| ||  | | |||||| | |||||||||||||  |     
T  943953 tttaaggcatcaaattacaaaatttatgctactttcgtcctctgtaattcgagcaaattttagtttatctcatgtaatttaaacaaatttcggtttacct 944052  T
Q  235 tctatcatatcatcgattttgta 257  Q
     || | |||||||||||||||||    
T  944053 cctcttatatcatcgattttgta 944075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 29949732 - 29949683
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||| |||||||||||| ||| || ||||||||||||||||||||    
T  29949732 taatttgaggaaatttcggtttatcccctgtcatatcatcgattttgtac 29949683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 31989571 - 31989515
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||||||||||||||||||| ||||||||||||| ||| | |||| |||| ||||||    
T  31989571 atggcatcaaattacaaaatttatggtactttcgccccctataatatgagcaaattt 31989515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 13499476 - 13499542
Alignment:
Q  127 gtaaaatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||||||||||||| |||||||||| ||||| ||||| | ||| |||||||||||| ||| |||||||    
T  13499476 gtaaaatctttatgacatcaaattataaaatttatggcaattt-gtcccttgtaatatgattaaattt 13499542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 16260686 - 16260636
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtact 259  Q
    ||||| ||||||||||||||||| || |||||||||| |||||||| ||||    
T  16260686 taattggagcaaatttcggtttgccccctatcatatcttcgattttatact 16260636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 26498517 - 26498566
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    ||||||||| ||  ||||||||| ||||||||||||||||| ||||||||    
T  26498517 agtgttttatcccctgtaatatatgttatttccggtttttcccctgtaaa 26498566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 35791209 - 35791164
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||| || |||||||||| || ||||||||||||    
T  35791209 catcaaattacaaaatttaaggtactttcgccctttgtaatttgag 35791164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 11478106 - 11478150
Alignment:
Q  141 gcatcaaattacaaaatctatggtactttcgtcccttgtaatttg 185  Q
    ||||||||||||||||| || |||||||||| | |||||||||||    
T  11478106 gcatcaaattacaaaatttaaggtactttcgcctcttgtaatttg 11478150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 31377767 - 31377711
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    ||||||||| |||||||||| ||| ||||||||| | | ||||||||||| ||||||    
T  31377767 atggcatcatattacaaaatttatagtactttcgcctcctgtaatttgagcaaattt 31377711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 32449953 - 32449917
Alignment:
Q  32 tgtaatataggttatttccggtttttctcctgtaaat 68  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  32449953 tgtaatataggtcatttctggtttttctcctgtaaat 32449917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 15885487 - 15885621
Alignment:
Q  123 ccttgtaaaatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaatttatgttcattccctctaatttgagcaaat 222  Q
    ||||||||||||| |||||||||||  |||||||| |||||||||||   ||||||||||||||||||||||   || |  |||| ||||||||||||||    
T  15885487 ccttgtaaaatctgtatggcatcaacgtacaaaatttatggtactttttccccttgtaatttgagtaaattttgttttaccccctgtaatttgagcaaat 15885586  T
Q  223 ttcggtttgtcctctatcatatcatcgattttgta 257  Q
    ||||||||  || ||  |||||||| |||||||||    
T  15885587 ttcggtttaccccctgccatatcattgattttgta 15885621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 20024144 - 20024212
Alignment:
Q  126 tgtaaaatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||||||||||||||||||||||||||||||| ||||||| |||   ||| ||||||||||||||||||    
T  20024144 tgtaaaatctttatggcatcaaattacaaaatttatggtaattttaacccctgtaatttgagtaaattt 20024212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 13153653 - 13153699
Alignment:
Q  141 gcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||    
T  13153653 gcatcaaaatacaaaatttacggtactttcgtcccttgtaatttgag 13153699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 31312619 - 31312701
Alignment:
Q  177 tgtaatttgagtaaatttatgttcattccctc-taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||| ||||||| ||| || ||||  ||||||||||||||||||||||  || || ||||||| ||||||||||||    
T  31312619 tgtaatttgagcaaatttaggtttatccccttgtaatttgagcaaatttcggtttaccccctgtcatatcttcgattttgtac 31312701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 4561802 - 4561851
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||||    
T  4561802 taatttgagcaaatttcggtttaccccctatcatatcttcgattttgtac 4561851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 15399733 - 15399778
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||| || |||||||||| |||||||||||||||    
T  15399733 catcaaattacaaaatttaaggtactttcgccccttgtaatttgag 15399778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 31567642 - 31567691
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||| |||||||| ||||||||||||||||| ||||||| ||||||||||    
T  31567642 agtgatttacccattgtaatataggttattttcggttttcctcctgtaaa 31567691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 23188764 - 23188815
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || || ||||||| ||||||||||||||    
T  23188764 taatttgagcaaatttcggtttaccccctgtcatatcttcgattttgtactg 23188815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 6896983 - 6897033
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtact 259  Q
    ||||||||||||||||||||||  || || ||||||| |||||||||||||    
T  6896983 taatttgagcaaatttcggtttaccccctgtcatatcttcgattttgtact 6897033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 6117762 - 6117713
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||| |||| ||||||  |||||| ||||||||||||    
T  6117762 taatttgagcaaatttccgtttatcctctgccatatcttcgattttgtac 6117713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 37082323 - 37082274
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    ||||||||||||  |||||||||||| |||||||||||| | ||||||||    
T  37082323 agtgttttaccccctgtaatataggtaatttccggttttacccctgtaaa 37082274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 38874536 - 38874585
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||| |||||||||||||||  || |||||||||| ||||||||||||    
T  38874536 taattttagcaaatttcggtttaccccctatcatatcttcgattttgtac 38874585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 42779047 - 42779003
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||| || |||||||||| |||||||||||||||    
T  42779047 catcaaattacaaaatttaaggtactttcg-cccttgtaatttgag 42779003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 8855573 - 8855525
Alignment:
Q  210 aatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||||||| |||  ||| ||| |||||||||||||||||||    
T  8855573 aatttgagcaaatttcagttactcccctaccatatcatcgattttgtac 8855525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 10819395 - 10819443
Alignment:
Q  20 tgttttacccaatgtaatataggttatttccggtttttctcctgtaaat 68  Q
    ||||||| || ||||||||||| | ||||| ||||||||||||||||||    
T  10819395 tgttttaacccatgtaatatagatcatttctggtttttctcctgtaaat 10819443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 24375804 - 24375860
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  24375804 atggcatcaaattacaaaatttatggtactttcgtcccttgtaatttgagcaaattt 24375860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 23289099 - 23289050
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||    
T  23289099 atggcatcaaattacaaaatttaaggtactttcgtcccctgtaatttgag 23289050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 9235536 - 9235488
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttga 186  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||    
T  9235536 atggcatcaaattacaaaatttaaggtactttcgccccttgtaatttga 9235488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 12719204 - 12719320
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaatttatgttcattccc-tctaatttgagcaaatttcggtttgtcctctatc 240  Q
    ||||||||| ||||||  ||| |||||||| ||||||||||||||| | ||||  ||| |  ||| ||||||||||||||||||||||||  |  ||  |    
T  12719204 catcaaatttcaaaattgatgatactttcgccccttgtaatttgagcagattttagtttacccccctctaatttgagcaaatttcggtttacctcctgcc 12719303  T
Q  241 atatcatcgattttgta 257  Q
    |||||||||||||||||    
T  12719304 atatcatcgattttgta 12719320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 11830352 - 11830301
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||||||    
T  11830352 taatttgagcaaatttcggtttaccccctatcatatcttcgattttgtactg 11830301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 2873625 - 2873576
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||||||||    
T  2873625 taatttgagcaaatttcggtttatcccctgtcatatcttcgattttgtac 2873576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 25653905 - 25653953
Alignment:
Q  212 tttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    |||||||||||||||||||  |||||| |||||| ||||||||||||||    
T  25653905 tttgagcaaatttcggtttaccctctaccatatcttcgattttgtactg 25653953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 12478750 - 12478699
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||| | ||||||||||||    
T  12478750 taatttgagcaaatttcggtttaccccctatcatatctttgattttgtactg 12478699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 35990745 - 35990796
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||  ||||||||||||||    
T  35990745 taatttgagcaaatttcggtttaccccctatcatattttcgattttgtactg 35990796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 12936501 - 12936463
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttt 56  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  12936501 agtgttttacccaatgtaatatatgtcatttccggtttt 12936463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 34227335 - 34227385
Alignment:
Q  18 agtgttttacccaatgtaatataggttatttccggtttt-tctcctgtaaa 67  Q
    ||||||||||||  |||||||||||| |||||||||||| |||||||||||    
T  34227335 agtgttttaccccctgtaatataggtcatttccggttttatctcctgtaaa 34227385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 38703796 - 38703845
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  || ||| |||||| ||||||||||||    
T  38703796 taatttgagcaaatttcggtttaccccctaccatatcttcgattttgtac 38703845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 41509580 - 41509629
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  || || ||||||| ||||||||||||    
T  41509580 taatttgagcaaatttcggtttaccccctgtcatatcttcgattttgtac 41509629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 960541 - 960497
Alignment:
Q  23 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||  |||||||||||| |||||||||||| ||||||||||    
T  960541 tttaccccctgtaatataggtcatttccggttttcctcctgtaaa 960497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 13373292 - 13373340
Alignment:
Q  139 tggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    ||||||||||||||||||| || |||| ||| | |||||||||||||||    
T  13373292 tggcatcaaattacaaaatttaaggtatttttgccccttgtaatttgag 13373340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 22438711 - 22438783
Alignment:
Q  122 cccttgtaaaatctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||| | ||||||||||||||||    
T  22438711 ccctagtaaaatctttatggcatcaaattacaaaatttattgtactttcgccccctataatttgagtaaattt 22438783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 2985697 - 2985745
Alignment:
Q  210 aatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  2985697 aatttgagcaaatttcggtttatcctctgccatatcatcgattttgtac 2985745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 17582557 - 17582511
Alignment:
Q  141 gcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    ||||||||||||||||| || |||||||||| |||||||||||||||    
T  17582557 gcatcaaattacaaaatttaaggtactttcgccccttgtaatttgag 17582511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 4658954 - 4658917
Alignment:
Q  31 atgtaatataggttatttccggtttttctcctgtaaat 68  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  4658954 atgtaatataggtcatttccggtttttctcctgtaaat 4658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 15309105 - 15309141
Alignment:
Q  32 tgtaatataggttatttccggtttttctcctgtaaat 68  Q
    ||||||||||||||||||||||||||| |||||||||    
T  15309105 tgtaatataggttatttccggtttttcccctgtaaat 15309141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 55257755 - 55257803
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttga 186  Q
    |||||||||||||||||||| || |||||||||| ||||| ||||||||    
T  55257755 atggcatcaaattacaaaatttaaggtactttcgccccttataatttga 55257803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 25124883 - 25124930
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttg 185  Q
    |||||||||||||| ||||| || |||||||||| |||||||||||||    
T  25124883 atggcatcaaattataaaatttaaggtactttcgccccttgtaatttg 25124930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 37050220 - 37050173
Alignment:
Q  147 aattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    ||||||||||| || |||||||||| ||||||||||||||| ||||||    
T  37050220 aattacaaaatttaaggtactttcgccccttgtaatttgagcaaattt 37050173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 45008123 - 45008076
Alignment:
Q  139 tggcatcaaattacaaaatctatggtactttcgtcccttgtaatttga 186  Q
    ||||||||||||||||||| || || ||||||| ||||||||||||||    
T  45008123 tggcatcaaattacaaaatttaaggaactttcgccccttgtaatttga 45008076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 7308257 - 7308209
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||||||| || |||||||||| ||| |||||||||||    
T  7308257 atggcatcaaattacaaaatttaaggtactttcg-cccctgtaatttgag 7308209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 18359346 - 18359395
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||||||| || |||||||| ||||  |||||||||||    
T  18359346 atggcatcaaattacaaaatttaaggtactttagtccgctgtaatttgag 18359395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 30226311 - 30226262
Alignment:
Q  145 caaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    ||||||||||||| ||||||||||||  |||||||| |||||| ||||||    
T  30226311 caaattacaaaatttatggtactttcaccccttgtagtttgagcaaattt 30226262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 25929 - 25880
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||||    
T  25929 atggcatcaaattacaaaatttaaggtactttcgccccttgtaatttgag 25880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 306726 - 306671
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||    
T  306726 atggcatcaaattacaaaatttatggtactttcg-cccctgtaatttgagcaaattt 306671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 49166822 - 49166771
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||| ||||||||||||||    
T  49166822 taatttgagcaaatttcggtttaccccctatcatatcttcgattttgtactg 49166771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 16875984 - 16876037
Alignment:
Q  134 ctttatggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||||||||||| || |||| ||| ||||| |||||||||||    
T  16875984 ctttatggcatcaaattacaaaatttaaggtatttttgtcccctgtaatttgag 16876037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 8678941 - 8678989
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttga 186  Q
    |||||||||||||||||||| || |||||||||| | ||||||||||||    
T  8678941 atggcatcaaattacaaaatttaaggtactttcgcctcttgtaatttga 8678989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 8810123 - 8810071
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgagtaaattt 194  Q
    |||||||||| ||||| || |||||||||||||| ||||||||||| ||||||    
T  8810123 catcaaattataaaatttaaggtactttcgtcccgtgtaatttgagaaaattt 8810071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 25244559 - 25244607
Alignment:
Q  210 aatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||| |||||||||  || |||||||||||||||||||||||    
T  25244559 aatttgagcaattttcggtttaccccctatcatatcatcgattttgtac 25244607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 39133261 - 39133210
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    |||||||||||||||||| ||||||| ||  |||||| ||||||||||||||    
T  39133261 taatttgagcaaatttcgatttgtcccctgccatatcttcgattttgtactg 39133210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 42161463 - 42161416
Alignment:
Q  140 ggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||||| || ||||||||||  ||||||||||||||    
T  42161463 ggcatcaaattacaaaatttaaggtactttcgctccttgtaatttgag 42161416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 49296163 - 49296249
Alignment:
Q  173 cccttgtaatttgagtaaatttatgttcattccctct-aatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||| ||||||  ||| |  |||| | |||||||||||||||||||||| || ||  |||||| ||||||||||||    
T  49296163 cccttgtaatttgagaaaatttcagtttaccccctgttaatttgagcaaatttcggtttgccccctgccatatcttcgattttgtac 49296249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 9780443 - 9780492
Alignment:
Q  138 atggcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||| ||||| || ||||||||| |||| |||||||||||    
T  9780443 atggcatcaaattaaaaaatttaaggtactttcatcccctgtaatttgag 9780492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 13555720 - 13555765
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||| ||||| || |||||||| |||||||||||||||||    
T  13555720 catcaaattataaaatttaaggtacttttgtcccttgtaatttgag 13555765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 13780458 - 13780413
Alignment:
Q  22 ttttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||| ||||||||||||| ||||||| |||| ||||||||||    
T  13780458 ttttaccccatgtaatataggtcatttccgattttcctcctgtaaa 13780413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 42056155 - 42056106
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  || ||  |||||||||||||||||||    
T  42056155 taatttgagcaaatttcggtttaccccctgccatatcatcgattttgtac 42056106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 4102996 - 4102916
Alignment:
Q  179 taatttgagtaaatttatgttcattccct-ctaatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||| ||||||| ||| |  |||| |||||||||||||||||||||||  || ||  |||||| ||||||||||||    
T  4102996 taatttgagaaaatttaggtttacccccttctaatttgagcaaatttcggtttaccccctgccatatcttcgattttgtac 4102916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 35539824 - 35539780
Alignment:
Q  23 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||  |||||||||||| ||||||||||||| |||||||||    
T  35539824 tttaccccctgtaatataggtcatttccggtttttttcctgtaaa 35539780  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 332240 - 332191
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  332240 taatttgagcaaatttctgtttatcccctatcatatcttcgattttgtac 332191  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 13437062 - 13437017
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||| || |||||||||| |||||||||||||||    
T  13437062 catcaaattacaaaatttaaggtactttcgccccttgtaatttgag 13437017  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 16639595 - 16639646
Alignment:
Q  144 tcaaattacaaaatctatggtactttcgtccc-ttgtaatttgagtaaattt 194  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||| ||||||    
T  16639595 tcaaattacaaaatttatggtactttcgcccctttgtaatttgagaaaattt 16639646  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 17890185 - 17890231
Alignment:
Q  141 gcatcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    ||||||||||||||||| || ||||||| ||||| ||||||||||||    
T  17890185 gcatcaaattacaaaatttaaggtacttccgtccattgtaatttgag 17890231  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 42086223 - 42086257
Alignment:
Q  32 tgtaatataggttatttccggtttttctcctgtaa 66  Q
    ||||||||||||||||| |||||||||||||||||    
T  42086223 tgtaatataggttattttcggtttttctcctgtaa 42086257  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 21770931 - 21770882
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    ||||||||||||||||||||||  |||||  |||||| ||||||||||||    
T  21770931 taatttgagcaaatttcggtttaccctctgccatatcttcgattttgtac 21770882  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 22152045 - 22152094
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||| |||||||||| ||||  |||||| |||||||||||||||||||    
T  22152045 taatttaagcaaatttcagtttaccctctaccatatcatcgattttgtac 22152094  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 25059920 - 25059965
Alignment:
Q  142 catcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    |||||||||||||||| || |||| ||||| |||||||||||||||    
T  25059920 catcaaattacaaaatttaaggtattttcgccccttgtaatttgag 25059965  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 44961182 - 44961133
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtac 258  Q
    |||||| |||||||||||||||  |||||| |||||| ||||||||||||    
T  44961182 taatttcagcaaatttcggtttaccctctaccatatcttcgattttgtac 44961133  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 44961246 - 44961193
Alignment:
Q  177 tgtaatttgagtaaatttatgttcattccctctaatttgagcaaatttcggttt 230  Q
    ||||||||||||||||||| ||| |  || | ||||||||||||||||||||||    
T  44961246 tgtaatttgagtaaatttaggttaaccccatgtaatttgagcaaatttcggttt 44961193  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 18458846 - 18458802
Alignment:
Q  23 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||  |||||||||||| |||||||||||| ||||||||||    
T  18458846 tttaccccctgtaatataggtcatttccggttttcctcctgtaaa 18458802  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 24987621 - 24987665
Alignment:
Q  23 tttacccaatgtaatataggttatttccggtttttctcctgtaaa 67  Q
    |||||||  |||||||||||| |||||||||||||| ||||||||    
T  24987621 tttaccccctgtaatataggtcatttccggtttttcccctgtaaa 24987665  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 63230 - 63281
Alignment:
Q  209 taatttgagcaaatttcggtttgtcctctatcatatcatcgattttgtactg 260  Q
    ||||||||||||||||||||||  || |||||||||| | ||||||||||||    
T  63230 taatttgagcaaatttcggtttaccccctatcatatctttgattttgtactg 63281  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 82391 - 82347
Alignment:
Q  143 atcaaattacaaaatctatggtactttcgtcccttgtaatttgag 187  Q
    ||||||||||||||| || |||||||||| ||| |||||||||||    
T  82391 atcaaattacaaaatttaaggtactttcgccccatgtaatttgag 82347  T

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