View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_20 (Length: 339)
Name: NF5086_high_20
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 4650163 - 4649820
Alignment:
| Q |
1 |
tcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgcttaaagactaattagctagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4650163 |
tcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgcttaaagaataattagctagct |
4650064 |
T |
|
| Q |
101 |
atttgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctagctaacttttatgttcttgaattgaa |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650063 |
aattgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctagctaacttttatgttcttgaattgaa |
4649964 |
T |
|
| Q |
201 |
taaaattaatcatgttacatagctttctcttaattttgtggttttaattataaa-----------ttcttattccgaatagaaaattggttccttaatca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |
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| T |
4649963 |
taaaattaatcatgttacatagctttctcttaattttgtggttttaattataaattgcatgtatgttcttattccgaatagaaaattggtcccttaacca |
4649864 |
T |
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| Q |
290 |
aacaattgagttcaagtggtaaacgagattcatcaatgatgaat |
333 |
Q |
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| T |
4649863 |
aacaattgagttcaagtggtaaacgagcttcatcaatgatgaat |
4649820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 23682093 - 23682337
Alignment:
| Q |
1 |
tcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttact---acattgcttgattaatctctctatgcttaaagactaattagcta |
97 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23682093 |
tcttggaaccaacactggtgaaaggactttcaaactccctgatcctctttactactacattgcttgattaatctctctatgcttaaagaataattagcta |
23682192 |
T |
|
| Q |
98 |
gctatttgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctagctaacttttatgttcttgaatt |
197 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |
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| T |
23682193 |
gctatttgcctaatgg---attattgatcttttgttctatatggaaatattcctatcatgtaatccatttcga-------------tatgttc-----tt |
23682271 |
T |
|
| Q |
198 |
gaataaaattaatcatgttac-------atagctttctcttaattttgtggttttaattataaatt |
256 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23682272 |
gaataaaattaatcatgttacataagaaatagctttctcttaattttgtggttttaattataaatt |
23682337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4645869 - 4645810
Alignment:
| Q |
1 |
tcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgc |
60 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
4645869 |
tcttggaaccaatactggtgaaaggactttcaagctccctgatcccctctactacattgc |
4645810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 26172736 - 26172777
Alignment:
| Q |
293 |
aattgagttcaagtggtaaacgagattcatcaatgatgaatt |
334 |
Q |
| |
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||||||||||||||||| || ||| ||||||||||||||||| |
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|
| T |
26172736 |
aattgagttcaagtggttaatgagtttcatcaatgatgaatt |
26172777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 23682361 - 23682393
Alignment:
| Q |
269 |
agaaaattggttccttaatcaaacaattgagtt |
301 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
23682361 |
agaaaattggttccttaatcaagcaattgagtt |
23682393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 13462562 - 13462514
Alignment:
| Q |
285 |
aatcaaacaattgagttcaagtggtaaacgagattcatcaatgatgaat |
333 |
Q |
| |
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|||||||| |||||||||||||| |||| ||| |||||||| ||||||| |
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| T |
13462562 |
aatcaaacgattgagttcaagtgttaaatgagtttcatcaaagatgaat |
13462514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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