View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_24 (Length: 281)
Name: NF5086_high_24
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 22034364 - 22034627
Alignment:
| Q |
1 |
atacattatctcactgtttttcctgcttccccaagcaaaatccaacttcctaatatattaaagtagcatttgacacactacctctcattgatgtataaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22034364 |
atacattatctcactgtttttcctgcttccccaagcaaaatccaacttcctaatatattaaagtagcatttgacacactacctctcattgatgtataaac |
22034463 |
T |
|
| Q |
101 |
atgtatgctggcaatttaagtttctaaagaaacatttcaccaaacttcaaaggnnnnnnnnccctttcatgattccatatatttcccaccctccatcact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22034464 |
atgtatgctggcaatttaagtttctaaagaaacatttcaccaaacttcaaagg-aaaaaaaccctttcatgattccatatatttcccaccctccatcact |
22034562 |
T |
|
| Q |
201 |
cccacatgcatcaaagtattcacttcaaggaccacccttccattttcaactcctttctacaaaat |
265 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22034563 |
cctacatgcatcaaagcattcacttcaaggaccacccttccattttcaactcctttctacaaaat |
22034627 |
T |
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