View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_33 (Length: 246)
Name: NF5086_high_33
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 51836586 - 51836812
Alignment:
| Q |
1 |
aacaattagttaactgaaactcgatagctagttagccacgtcgtaagcaaacacacttacgcaaccatgtgcatatatggctgaatcagattctacagta |
100 |
Q |
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| T |
51836586 |
aacaattagttaactgaaactcgatagctagttagccacgtcgtaagcaaacacacttacgcaaccatgtgcatatatggctgaatcagattctacagta |
51836685 |
T |
|
| Q |
101 |
ctggtgnnnnnnnnnnnnnnnnggttatggccaagcagattaatgtggtgtattttgattagttattagtcccttagttgaattttaggaccactcaagg |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51836686 |
ctggtgaaaaaacaaaataaaaggttatggccaagcagattaatgtggtgtattttgattagttattagtcccttatttgaattttaggaccactcaagg |
51836785 |
T |
|
| Q |
201 |
ctagaagatgagcgcatatatcatatg |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
51836786 |
ctagaagatgagcgcatatatcatatg |
51836812 |
T |
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