View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_38 (Length: 234)
Name: NF5086_high_38
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_38 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 6186948 - 6186734
Alignment:
| Q |
20 |
gtgagagtgatcatgtagagataaatcaaaattttcatccttttttgctttccgggacaaaagttgtcgatggatatgcaaaaatgcttgttacatcggt |
119 |
Q |
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| T |
6186948 |
gtgagagtgatcatgtagagataaatcaaaattttcatccttttttgctttccgggacaaaagttgtcgatggatatgcaaaaatgcttgttacatcggt |
6186849 |
T |
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| Q |
120 |
cggtatgaacacaacatggggacaaatgatgagttcgataagcaatgacatcgacgaggaaacacctttgcaaacaaggttgaataagctaacatcatcg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186848 |
cggtatgaacacaacatggggacaaatgatgagttcgataagcaatgacatcgatgaggaaacacctttgcaaacaaggttgaataagctaacatcatcg |
6186749 |
T |
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| Q |
220 |
atcggaaaagttggt |
234 |
Q |
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| T |
6186748 |
atcggaaaagttggt |
6186734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 4243892 - 4243678
Alignment:
| Q |
20 |
gtgagagtgatcatgtagagataaatcaaaattttcatccttttttgctttccgggacaaaagttgtcgatggatatgcaaaaatgcttgttacatcggt |
119 |
Q |
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||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4243892 |
gtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggt |
4243793 |
T |
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| Q |
120 |
cggtatgaacacaacatggggacaaatgatgagttcgataagcaatgacatcgacgaggaaacacctttgcaaacaaggttgaataagctaacatcatcg |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||| || ||||| || |
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| T |
4243792 |
tggtatgaacacaacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctca |
4243693 |
T |
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| Q |
220 |
atcggaaaagttggt |
234 |
Q |
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|||||||| |||||| |
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| T |
4243692 |
atcggaaaggttggt |
4243678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 38358526 - 38358424
Alignment:
| Q |
57 |
tccttttttgctttccgggacaaaagttgtcgatggatatgcaaaaatgcttgttacatcggtcggtatgaacacaacatggggacaaatgatgagttcg |
156 |
Q |
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|||||||||| | ||||| |||||||||| ||||||||||| | |||||||| ||||| || || | |||||| ||||||||||||||||||| ||| |
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| T |
38358526 |
tccttttttgttgtccggcgcaaaagttgtggatggatatgctcagatgcttgtaacatctgtgggcaaaaacacatcatggggacaaatgatgagctcg |
38358427 |
T |
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| Q |
157 |
ata |
159 |
Q |
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||| |
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| T |
38358426 |
ata |
38358424 |
T |
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