View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_high_39 (Length: 232)
Name: NF5086_high_39
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 8976452 - 8976571
Alignment:
| Q |
22 |
aaaaccctatttgtaattatgattaggaatgaaaatagattggactgagttagattttacaaagatttgttgaaaacattaaggtctaaatacga--tgt |
119 |
Q |
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| T |
8976452 |
aaaaccctatttgtaattatgattaggaatgaaaatagattgcactgagttagattttacaaagatttgttcaaaacattaaggtctaaatacgacttgt |
8976551 |
T |
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| Q |
120 |
tatttgtcattggcttattg |
139 |
Q |
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| T |
8976552 |
tatttgtcattggcttattg |
8976571 |
T |
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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8976601 - 8976679
Alignment:
| Q |
137 |
ttgttatcatttgatttgatatgataacctattcaaaaatttaacttaatgatattaattaatttttaagatttaatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8976601 |
ttgttatcatttgatttgatatgataacctattcaaaaatttaacttaatgatattaattcttttttaagatttaatat |
8976679 |
T |
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