View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086_low_1 (Length: 728)

Name: NF5086_low_1
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086_low_1
NF5086_low_1
[»] chr2 (1 HSPs)
chr2 (16-712)||(37635377-37636072)


Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 37635377 - 37636072
Alignment:
Q  16 atggaggatggggccaagccaataatctcttcacactagtagtaggagcataaccatctgaatcaaaagactacatgaacatatttcatcaacgttgaga 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635377 atggaggatggggccaaaccaataatctcttcacactagtagtaggagcataaccatctgaatcaaaagactacatgaacatatttcatcaacgttgaga 37635476  T
Q  116 tttgagaaataatatattgaattggatgcttgatgttatnnnnnnnnntaaccttgttcctaaaatcccaaattttccaaagaataatgacaatgatcac 215  Q
    ||||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635477 tttgagaaataatatcttgaattggatgcttgatgttataaaaaaaa-taaccttgttcctaaaatcccaaattttccaaagaataatgacaatgatcac 37635575  T
Q  216 actatgactatcaataatattactcgatcaatatgttaaattcaaaccatcgtgaggagggatcgaagaaagtggacaaaccttcaaccaaacctccatg 315  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37635576 actatgactatcaataacattactcgatcaatatgttaaattcaaaccatcgtgaggagggatcgaagaaagtggacaaaccttcaaccaaacctccata 37635675  T
Q  316 gcttttcccaattttccctatcaagatcacaaatcgggtaggtattattctaaagtaaacttgatagttataggcgtgagggggtgtatttgtgacaaag 415  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37635676 tcttttcccaattttccctatcaagataacaaatcgggtaggtattattctaaagtaaacttgatagttataggcgtgagggggtgtatttgtgacagag 37635775  T
Q  416 aacaatannnnnnnnnnnnnnngcaaacatacgtcaaattgcaacacacatcatacaacatataatgaaagtataatatgttgtaattataagattacat 515  Q
    |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  37635776 aacaatattttttattttttttgcaaacatacgtcaaattgcaacacacatcatacaacatataatgaaagtataatatgttgtaattataagattaact 37635875  T
Q  516 atgcataaaaaccgatatccaaagtatacaaaatattttgaacgtcatatacaaataaaacatatacccggttggataacataccccacccgnnnnnnnn 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            
T  37635876 atgcataaaaaccgatatccaaagtatacaaaatattttgaacgtcatatacaaataaagcatatacccggttggataacataccccacccgcacacatc 37635975  T
Q  616 nnnnnnnnnnntcctagttcgacgatataccatatatattttgaattttataattcaaacaacnnnnnnnaggttaacatgatattaataggaagtt 712  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||| ||||||    
T  37635976 acacacacacatcctagttcgacgatataccatatatattttgaattttataattcaaacaactttttttaggttaacatgatattgatacgaagtt 37636072  T

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