View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5086_low_11 (Length: 421)
Name: NF5086_low_11
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 405
Target Start/End: Original strand, 30238089 - 30238490
Alignment:
| Q |
6 |
tggacatcatcaatgacacaacggtctccaatgtcaaaagggtgcatgatgaagacaaagatgatagcttccaagacagttttgcaagtgccttggaatg |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238089 |
tggacaccatcaatgacacaacggtctccaatgtcaaaagggtgcatgatgaagacaaagatgatagcttccaagacagttttgcaagtgccttggaatg |
30238188 |
T |
|
| Q |
106 |
caactcctattaaaacagtttgtgtgatacagaacaatattatcttcattgtagcaacttccatcaccaaaagggtcacaattattattatnnnnnnnnn |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238189 |
caactcctattaaaacagtttgtgtgatacagaacaatattatcttcattgtagcaacttccatcaccaaaagggtcacaattattattatcacacacac |
30238288 |
T |
|
| Q |
206 |
nnnnnnacttgctaatttgtgaagttgttgcactgctgttttggtatcattcagtgattgtgctagtgcttttctttcataataagctcgaatctgatta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238289 |
aacacaacttgctaatttgtgaagttgttgcactgctgttttggtatcattcagtgattgtgctagtgcttttctttcataataagctcgaatctgatta |
30238388 |
T |
|
| Q |
306 |
caaattcaatgaccattaattaatttgataaataactattgt--nnnnnnnngtgacacaaattgatattcacaagtgataaattttcaagcaagactta |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238389 |
caaattcaatgaccattaattaatttgataaataactattgtaataaaaaaagtgacacaaattgatattcacaagtgataaattttcaagcaagactta |
30238488 |
T |
|
| Q |
404 |
cc |
405 |
Q |
| |
|
|| |
|
|
| T |
30238489 |
cc |
30238490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University