View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_low_14 (Length: 382)
Name: NF5086_low_14
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 375
Target Start/End: Complemental strand, 34956822 - 34956478
Alignment:
| Q |
24 |
ggcaagttttaaggaccggacgaatcctataaatagacaggttgggtttagggttttgtagagtggaaaaggcaaatctgtagagagaacaaaataggga |
123 |
Q |
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| T |
34956822 |
ggcaagttttaaggaccggacgaatcctataaatagacaggttgggtttagggttttgtagagtggaaaaggaaaatctctagtgagaacaaaataggga |
34956723 |
T |
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| Q |
124 |
acttttagaaaatcaataggttaaaggttgaggtctttttagtagattatagggtttggaaatatcattcaaaaagttaaaaattagggtttgttcttaa |
223 |
Q |
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| T |
34956722 |
acctttaggaaatcaataggttaaaggttgaggtctttttagtagattatagggtttggaaataccattcaaaaagttagaaattagggtttgttcttaa |
34956623 |
T |
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| Q |
224 |
agaaattgttgaagactaattctttgtaactcttatacttgtgtatgctacacaaaaacatacccttgtgtactctaaacgtcaccttagtttataatat |
323 |
Q |
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| T |
34956622 |
agaaattgttgaagactaattccttgtaacccttatacttgtgtatgctactcaaaaatatgcccttgtgtactctaaacgtcaccctaatttataatat |
34956523 |
T |
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| Q |
324 |
ttttgagtttactgtttgcaacttaatttttctcttagttttacctttgctt |
375 |
Q |
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| T |
34956522 |
ttttgagttta-------caacttaatttttctcttagttttaccttagctt |
34956478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 9177450 - 9177397
Alignment:
| Q |
204 |
aaattagggtttgttcttaaagaaattgttgaagactaattctttgtaactctt |
257 |
Q |
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| T |
9177450 |
aaattagagtttgtttttagagaacttgttgaagactaattttttgtaactctt |
9177397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 31649522 - 31649613
Alignment:
| Q |
107 |
agagaacaaaatagggaacttttagaaaatcaataggttaaaggttgaggtctttt--tagtagattatagggtttggaaatatcattcaaa |
196 |
Q |
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| T |
31649522 |
agagaacaaaagagggaaccattaggaaatcaataggctaaaggttgaggacttttggaggtaaattctagggtttggaaacaccattcaaa |
31649613 |
T |
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