View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086_low_16 (Length: 368)

Name: NF5086_low_16
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086_low_16
NF5086_low_16
[»] chr6 (6 HSPs)
chr6 (183-268)||(29152689-29152777)
chr6 (160-206)||(29299519-29299565)
chr6 (64-117)||(29130874-29130927)
chr6 (64-117)||(23216414-23216467)
chr6 (64-120)||(29012455-29012511)
chr6 (176-208)||(34279073-34279105)
[»] chr7 (1 HSPs)
chr7 (176-278)||(42445698-42445797)
[»] chr4 (4 HSPs)
chr4 (64-120)||(9568785-9568841)
chr4 (64-116)||(54295512-54295564)
chr4 (235-278)||(9568599-9568642)
chr4 (72-120)||(9603015-9603063)
[»] scaffold0134 (1 HSPs)
scaffold0134 (305-359)||(16968-17022)


Alignment Details
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 29152689 - 29152777
Alignment:
Q  183 tttgggtagttgggttccacaatacaaattcgcta---tcatcatattcattttcatggaaacaaagtgtgccattaatacaaccaaaa 268  Q
    ||||||||||||||||||||| ||||| |||| ||   | || ||||||||||| ||||| ||||||||| |||||||||| |||||||    
T  29152689 tttgggtagttgggttccacactacaatttcgttacaattattatattcattttgatggagacaaagtgtaccattaatactaccaaaa 29152777  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 29299565 - 29299519
Alignment:
Q  160 actgggtggaaggggcttgattgtttgggtagttgggttccacaata 206  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||    
T  29299565 actgggaggaaggagcttgattgtttgggtagctgggttccacaata 29299519  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 29130927 - 29130874
Alignment:
Q  64 cataacgaatgaccttatagtcatttataaggtcatcataaccaaatccatgaa 117  Q
    ||||||||||||||||||||||||||||||  |  ||||||| |||||||||||    
T  29130927 cataacgaatgaccttatagtcatttataacatggtcataactaaatccatgaa 29130874  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 23216414 - 23216467
Alignment:
Q  64 cataacgaatgaccttatagtcatttataaggtcatcataaccaaatccatgaa 117  Q
    |||| ||||||| |||||||||||||||||  |  |||||||||||||||||||    
T  23216414 catatcgaatgatcttatagtcatttataacatggtcataaccaaatccatgaa 23216467  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 29012511 - 29012455
Alignment:
Q  64 cataacgaatgaccttatagtcatttataaggtcatcataaccaaatccatgaagat 120  Q
    |||||||||||||||||||||| ||| |||     ||||||||||||||||||||||    
T  29012511 cataacgaatgaccttatagtcttttgtaacacggtcataaccaaatccatgaagat 29012455  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 34279073 - 34279105
Alignment:
Q  176 ttgattgtttgggtagttgggttccacaataca 208  Q
    |||||||||||||| ||||||||||||||||||    
T  34279073 ttgattgtttgggtggttgggttccacaataca 34279105  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 42445797 - 42445698
Alignment:
Q  176 ttgattgtttgggtagttgggttccacaatacaaattcgctatcatcatattcattttcatggaaacaaagtgtgccattaatacaaccaaaaccaaata 275  Q
    ||||||| |||||||| ||| ||||||||||||| || || || || ||   ||| |||||||| ||| |||||||||||||||| |||||||||||| |    
T  42445797 ttgattgcttgggtagatggattccacaatacaattttgccataattat---catattcatggagacagagtgtgccattaatactaccaaaaccaaaaa 42445701  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 9568841 - 9568785
Alignment:
Q  64 cataacgaatgaccttatagtcatttataaggtcatcataaccaaatccatgaagat 120  Q
    |||||| |||||| |||||||||||| |||| ||||| |||||||||||||||||||    
T  9568841 cataacaaatgacattatagtcatttctaagttcatcgtaaccaaatccatgaagat 9568785  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 54295512 - 54295564
Alignment:
Q  64 cataacgaatgaccttatagtcatttataaggtcatcataaccaaatccatga 116  Q
    |||||| ||||| |||||||||||||||||| || || |||||||||||||||    
T  54295512 cataacaaatgagcttatagtcatttataagttcgtcgtaaccaaatccatga 54295564  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 9568642 - 9568599
Alignment:
Q  235 atggaaacaaagtgtgccattaatacaaccaaaaccaaatatac 278  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||    
T  9568642 atggagacaaagtgtgccattaatactaccaaaaccaaaaatac 9568599  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 9603015 - 9603063
Alignment:
Q  72 atgaccttatagtcatttataaggtcatcataaccaaatccatgaagat 120  Q
    ||||| ||||| |||||| ||||||| || |||||||||||||||||||    
T  9603015 atgacattataatcatttctaaggtcgtcgtaaccaaatccatgaagat 9603063  T

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Target: scaffold0134 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 16968 - 17022
Alignment:
Q  305 gagaaatctattttgaatttattctcaaacctctcaccggaaagaggataaaaat 359  Q
    |||||||||| |||||  |||||||||||||||||||| ||||||| ||||||||    
T  16968 gagaaatctaatttgaccttattctcaaacctctcaccagaaagagaataaaaat 17022  T

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