View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086_low_19 (Length: 341)

Name: NF5086_low_19
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086_low_19
NF5086_low_19
[»] chr3 (34 HSPs)
chr3 (7-341)||(51836210-51836543)
chr3 (89-210)||(27177404-27177525)
chr3 (89-162)||(50203848-50203921)
chr3 (89-162)||(35011697-35011770)
chr3 (89-162)||(35011904-35011977)
chr3 (89-212)||(38421975-38422096)
chr3 (92-192)||(44145115-44145215)
chr3 (87-162)||(21832680-21832755)
chr3 (89-211)||(10758999-10759121)
chr3 (87-291)||(12799793-12799985)
chr3 (92-162)||(13769285-13769355)
chr3 (89-254)||(9264077-9264242)
chr3 (89-162)||(19820519-19820592)
chr3 (89-194)||(29763687-29763792)
chr3 (82-291)||(40230419-40230627)
chr3 (89-162)||(44573679-44573752)
chr3 (89-162)||(44573976-44574049)
chr3 (89-210)||(50692518-50692639)
chr3 (87-162)||(4191111-4191186)
chr3 (89-211)||(50692314-50692436)
chr3 (100-145)||(1715598-1715643)
chr3 (89-162)||(4029635-4029708)
chr3 (89-162)||(11414403-11414476)
chr3 (89-162)||(21750515-21750588)
chr3 (89-162)||(22407432-22407505)
chr3 (89-162)||(22407639-22407712)
chr3 (89-154)||(24539202-24539267)
chr3 (89-162)||(34715446-34715519)
chr3 (89-162)||(43101362-43101435)
chr3 (89-158)||(44461332-44461401)
chr3 (89-162)||(45443320-45443393)
chr3 (90-210)||(26926900-26927018)
chr3 (89-121)||(46139313-46139345)
chr3 (130-162)||(48685349-48685381)
[»] chr1 (29 HSPs)
chr1 (89-211)||(1233917-1234039)
chr1 (90-254)||(22892680-22892844)
chr1 (87-165)||(22892422-22892500)
chr1 (89-210)||(5222686-5222807)
chr1 (89-162)||(17419827-17419900)
chr1 (89-162)||(21638257-21638330)
chr1 (89-162)||(33879769-33879842)
chr1 (89-162)||(33964413-33964486)
chr1 (87-165)||(22892884-22892962)
chr1 (89-162)||(2697322-2697395)
chr1 (89-162)||(11018894-11018967)
chr1 (89-210)||(38871146-38871267)
chr1 (89-162)||(45403480-45403553)
chr1 (83-162)||(15392144-15392223)
chr1 (91-162)||(24131874-24131945)
chr1 (89-140)||(34076664-34076715)
chr1 (89-291)||(38870940-38871143)
chr1 (90-160)||(27957801-27957871)
chr1 (89-151)||(35926239-35926301)
chr1 (89-162)||(4022116-4022189)
chr1 (89-162)||(8520084-8520157)
chr1 (81-190)||(10017311-10017420)
chr1 (89-158)||(20735566-20735635)
chr1 (89-162)||(31305751-31305824)
chr1 (89-162)||(37600912-37600985)
chr1 (89-210)||(39649075-39649196)
chr1 (89-162)||(43361543-43361616)
chr1 (96-160)||(3774061-3774125)
chr1 (130-210)||(24382392-24382472)
[»] chr6 (31 HSPs)
chr6 (89-291)||(24558699-24558901)
chr6 (89-210)||(15102615-15102737)
chr6 (90-187)||(15293866-15293963)
chr6 (84-160)||(25999065-25999141)
chr6 (84-160)||(26098796-26098872)
chr6 (96-291)||(11316959-11317154)
chr6 (89-160)||(26098590-26098661)
chr6 (89-278)||(15102745-15102931)
chr6 (89-210)||(26098334-26098455)
chr6 (89-162)||(12134474-12134547)
chr6 (89-210)||(25998809-25998930)
chr6 (90-162)||(10733430-10733502)
chr6 (89-162)||(1744833-1744906)
chr6 (89-254)||(11313373-11313538)
chr6 (218-291)||(30526954-30527027)
chr6 (93-165)||(10418333-10418405)
chr6 (178-254)||(18494354-18494430)
chr6 (132-291)||(29742470-29742627)
chr6 (91-162)||(8144057-8144128)
chr6 (89-203)||(30526836-30526951)
chr6 (89-147)||(12124695-12124753)
chr6 (89-203)||(19291909-19292023)
chr6 (100-194)||(23591537-23591631)
chr6 (89-203)||(30539419-30539533)
chr6 (89-162)||(16877001-16877074)
chr6 (89-162)||(17096689-17096762)
chr6 (89-162)||(19054533-19054606)
chr6 (93-162)||(19712604-19712673)
chr6 (89-162)||(24055100-24055173)
chr6 (89-162)||(28149833-28149906)
chr6 (91-147)||(22875131-22875187)
[»] chr7 (30 HSPs)
chr7 (130-291)||(6751537-6751698)
chr7 (89-203)||(13310416-13310530)
chr7 (89-291)||(16565010-16565211)
chr7 (89-291)||(16600451-16600652)
chr7 (84-210)||(33855683-33855809)
chr7 (89-170)||(43565996-43566076)
chr7 (89-291)||(4257991-4258192)
chr7 (87-165)||(40703400-40703478)
chr7 (89-210)||(16564886-16565007)
chr7 (89-210)||(16600655-16600776)
chr7 (87-162)||(29780187-29780262)
chr7 (89-291)||(6813069-6813271)
chr7 (89-162)||(1661182-1661255)
chr7 (87-192)||(40703848-40703953)
chr7 (130-210)||(6751741-6751821)
chr7 (90-165)||(40703644-40703719)
chr7 (89-254)||(6782986-6783151)
chr7 (89-162)||(28910072-28910145)
chr7 (89-162)||(34590568-34590641)
chr7 (89-161)||(8585132-8585204)
chr7 (87-162)||(257256-257331)
chr7 (89-211)||(6813274-6813396)
chr7 (96-162)||(24426792-24426858)
chr7 (89-162)||(12578451-12578524)
chr7 (218-291)||(23821450-23821523)
chr7 (89-162)||(31374805-31374878)
chr7 (219-291)||(258545-258617)
chr7 (90-210)||(33833942-33834061)
chr7 (98-162)||(36092599-36092663)
chr7 (92-140)||(40792806-40792854)
[»] chr4 (34 HSPs)
chr4 (89-291)||(29113360-29113562)
chr4 (103-208)||(20441461-20441566)
chr4 (96-291)||(28245904-28246099)
chr4 (89-212)||(53863895-53864018)
chr4 (89-162)||(56511544-56511617)
chr4 (89-291)||(1922982-1923184)
chr4 (145-291)||(17076987-17077132)
chr4 (89-162)||(56511337-56511410)
chr4 (89-160)||(10390466-10390537)
chr4 (218-291)||(400490-400563)
chr4 (89-162)||(991244-991317)
chr4 (89-162)||(29669354-29669427)
chr4 (89-162)||(29669669-29669742)
chr4 (89-162)||(45427243-45427316)
chr4 (89-162)||(52214655-52214728)
chr4 (89-162)||(53740222-53740295)
chr4 (89-161)||(6778667-6778739)
chr4 (97-160)||(10390675-10390738)
chr4 (89-212)||(25753596-25753719)
chr4 (89-155)||(10390286-10390352)
chr4 (257-291)||(27272746-27272780)
chr4 (89-162)||(990587-990660)
chr4 (89-162)||(13254423-13254496)
chr4 (89-162)||(23018510-23018583)
chr4 (89-210)||(23350791-23350911)
chr4 (89-162)||(27048399-27048472)
chr4 (89-210)||(33629651-33629772)
chr4 (218-291)||(33629775-33629848)
chr4 (97-162)||(35269051-35269116)
chr4 (89-210)||(43943665-43943786)
chr4 (89-162)||(45426927-45427000)
chr4 (89-162)||(51469521-51469594)
chr4 (89-162)||(53386103-53386176)
chr4 (89-157)||(34205984-34206052)
[»] chr8 (22 HSPs)
chr8 (87-192)||(36037200-36037305)
chr8 (89-203)||(36039785-36039899)
chr8 (89-162)||(7621934-7622007)
chr8 (89-148)||(30066036-30066095)
chr8 (89-210)||(10989025-10989146)
chr8 (89-210)||(10989232-10989353)
chr8 (89-162)||(18905896-18905969)
chr8 (89-162)||(20298507-20298580)
chr8 (89-162)||(21085139-21085212)
chr8 (89-210)||(30176455-30176576)
chr8 (89-162)||(32931441-32931514)
chr8 (89-162)||(36997206-36997279)
chr8 (89-165)||(22451385-22451461)
chr8 (91-162)||(34248399-34248470)
chr8 (89-291)||(15010812-15011017)
chr8 (92-162)||(23027822-23027892)
chr8 (96-162)||(42228811-42228877)
chr8 (89-162)||(20760651-20760724)
chr8 (89-162)||(22277564-22277637)
chr8 (93-162)||(34248117-34248186)
chr8 (89-162)||(43599351-43599424)
chr8 (89-162)||(43984307-43984380)
[»] scaffold1138 (1 HSPs)
scaffold1138 (89-288)||(1864-2064)
[»] chr5 (24 HSPs)
chr5 (89-255)||(18914152-18914318)
chr5 (89-210)||(18914359-18914480)
chr5 (92-210)||(20720544-20720662)
chr5 (132-210)||(36878318-36878396)
chr5 (87-289)||(18107745-18107947)
chr5 (96-160)||(2716385-2716449)
chr5 (118-210)||(39268010-39268102)
chr5 (93-212)||(38376721-38376840)
chr5 (89-210)||(13413576-13413697)
chr5 (89-162)||(28358026-28358099)
chr5 (89-162)||(38131804-38131877)
chr5 (89-210)||(39268218-39268339)
chr5 (87-162)||(24918201-24918276)
chr5 (145-291)||(3015464-3015609)
chr5 (113-211)||(10668351-10668449)
chr5 (89-162)||(1028084-1028157)
chr5 (89-210)||(2908760-2908881)
chr5 (89-162)||(4465176-4465249)
chr5 (89-162)||(12965237-12965310)
chr5 (89-162)||(13843737-13843810)
chr5 (89-162)||(24994109-24994182)
chr5 (89-162)||(28156278-28156351)
chr5 (100-160)||(24792124-24792184)
chr5 (92-140)||(30770058-30770106)
[»] chr2 (25 HSPs)
chr2 (89-291)||(32667094-32667296)
chr2 (89-162)||(6183357-6183430)
chr2 (89-162)||(10429779-10429852)
chr2 (89-162)||(41002273-41002346)
chr2 (91-194)||(5721539-5721642)
chr2 (87-291)||(17727313-17727519)
chr2 (89-159)||(39108398-39108468)
chr2 (89-210)||(12431890-12432011)
chr2 (89-210)||(12432097-12432218)
chr2 (89-162)||(21214192-21214265)
chr2 (89-162)||(29684259-29684332)
chr2 (89-210)||(31761124-31761245)
chr2 (89-162)||(42768325-42768398)
chr2 (89-162)||(43195824-43195897)
chr2 (100-192)||(44266310-44266402)
chr2 (133-192)||(10862316-10862375)
chr2 (89-291)||(31761248-31761444)
chr2 (89-151)||(5424773-5424835)
chr2 (89-210)||(8044536-8044658)
chr2 (92-162)||(10849485-10849555)
chr2 (93-162)||(3976466-3976535)
chr2 (89-162)||(23054366-23054439)
chr2 (89-162)||(27545108-27545180)
chr2 (90-162)||(11969092-11969164)
chr2 (89-121)||(15820103-15820135)
[»] scaffold0339 (1 HSPs)
scaffold0339 (130-203)||(15684-15757)
[»] scaffold0785 (1 HSPs)
scaffold0785 (103-162)||(3125-3184)
[»] scaffold1112 (1 HSPs)
scaffold1112 (108-162)||(1245-1299)
[»] scaffold0989 (1 HSPs)
scaffold0989 (89-162)||(2938-3011)
[»] scaffold0032 (1 HSPs)
scaffold0032 (91-128)||(45345-45382)
[»] scaffold0166 (1 HSPs)
scaffold0166 (100-160)||(34507-34567)
[»] scaffold0007 (1 HSPs)
scaffold0007 (178-210)||(193047-193079)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 51836210 - 51836543
Alignment:
Q  7 tcgaagaatattatcaatatctttttgttatgagctcatgaactacttgatcgaaattaaagagaaccaattcgcatgtttattgaaatttggggtctaa 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  51836210 tcgaaaaatattatcaatatctttttgttatgagctcatgaactacttgatcgaaattaaagagaaccgattcgcatgtttgttgaaatttggggtctaa 51836309  T
Q  107 ctcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttcc 206  Q
     |||||||||||||| ||  || |||||||||||||||||||||||||||||  |||||||||||||| |||||||  || |||||||||||||||| ||    
T  51836310 ttcattcttataaaaccaacttgtgaggtgaggagtgtctcctatttataaa--ctcataaaaaatctcaactatccaatatgggatttaggtttttccc 51836407  T
Q  207 aatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgac-aaactctgataccaatgtttgggaggct 305  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||| |    
T  51836408 aatacactcttctcacgtccaatactatttaggctttgtgcgtgaataagtaggtgatctttgaattcgacaaaactctgataccaatatttgggaggtt 51836507  T
Q  306 aaaagaaaaggggcgaatcattccaaaaataagacc 341  Q
    ||||||||||||||||||||||||||||||||||||    
T  51836508 aaaagaaaaggggcgaatcattccaaaaataagacc 51836543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 27177525 - 27177404
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| |||| |||| |||| |||| | | ||||||| |||||| |||||| | | |||||||||| ||||| | ||| | |||||||||||    
T  27177525 ttgaaatttggggcctaaatcatccttacaaaaccggcttatgagatgaggactgtctcatctatataaactcttataaagagtctcatctatctgatgt 27177426  T
Q  189 gggatttaggttttttccaata 210  Q
    | |||||  |||||||||||||    
T  27177425 gagatttgagttttttccaata 27177404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 50203848 - 50203921
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | |||||| |||||||||||| ||||| ||||||||||||    
T  50203848 ttgaaatttggggcctaactcatccttacaaaaccggtttataaggtgaggagtgcctcctctttataaactct 50203921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 35011770 - 35011697
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | ||| || |||||||||||||||||| ||||||| ||||    
T  35011770 ttgaaatttggggcctaactcatccttacaaaaccggttcataaggtgaggagtgtctcctctttataatctct 35011697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 35011977 - 35011904
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | ||| || |||||||||||| ||||| ||||||||||||    
T  35011977 ttgaaatttggggcctaactcatccttacaaaaccggttcataaggtgaggagtgcctcctctttataaactct 35011904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 38422096 - 38421975
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||||||||||||  |||| |||||| | || | ||||||| | || ||||||  |||||||||| || || | ||| | ||||| |||||    
T  38422096 ttgaaatttggggtctaactcaaccttacaaaatcggcttgtaaggtgagaactgcctccta--tataaactcttattaatagtcttatctatccgatgt 38421999  T
Q  189 gggatttaggttttttccaatata 212  Q
    |||| |||||||||| ||||||||    
T  38421998 gggacttaggtttttcccaatata 38421975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 44145115 - 44145215
Alignment:
Q  92 aaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtggg 191  Q
    ||||||||||||||| |||| ||||||||| ||  |||| ||||||| | |||||||| |||||||||| | || || | ||| | ||||||||||||||    
T  44145115 aaatttggggtctaaatcatccttataaaaccaacttataaggtgagtattgtctcctctttataaactattatcaagagtcttatctatctgatgtggg 44145214  T
Q  192 a 192  Q
    |    
T  44145215 a 44145215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 21832680 - 21832755
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||| ||||||||| |||| |||| |||  ||| ||||||||| ||||||||  |||||||||||    
T  21832680 tattgaaatttggggcctaactcatccttacaaaaccagcatataaggtgaggattgtctcctccttataaactct 21832755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 10758999 - 10759121
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||||||||||||| |||| |||| |   || ||||||||| | || |||||||||||| | |||  | |||||||| | ||||| |||||    
T  10758999 ttgaaatttggggtctaactcatccttacaaaaccgacttgtgaggtgagaattgcctcctatttatatattcttctcaaaaatcttatctatccgatgt 10759098  T
Q  189 gggatttaggttttttccaatat 211  Q
    || | ||| ||||||| ||||||    
T  10759099 ggaacttaagtttttttcaatat 10759121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 291
Target Start/End: Complemental strand, 12799985 - 12799793
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgat 186  Q
    |||||||||||||||  |||||||| | || ||||||||||| | ||||||||| || || || |||||||||||| ||          | ||||| |||    
T  12799985 tattgaaatttggggcttaactcatccatacaaaatcagtttgtaaggtgaggattgccttctctttataaactcttat----------atctatccgat 12799896  T
Q  187 gtgggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctga 286  Q
    |||||| ||  ||||||||||||||||  |  ||| | |||| ||| ||| ||||| |||||| ||||| ||| ||| | ||||||||||||| ||||||    
T  12799895 gtgggacttgagttttttccaatataccct--tcatgtccaacactctttgggcttggtgcgtaaataagtagatgacccttgaattcgacaagctctga 12799798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 13769285 - 13769355
Alignment:
Q  92 aaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| ||||||||| |||| |||| ||| || | |||||||||||| ||||| ||||||||||||    
T  13769285 aaatttggggcctaactcatccttacaaaaccagcttgtaaggtgaggagtgcctcctctttataaactct 13769355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 9264077 - 9264242
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| |||||| |||||  | || | ||| | ||||| |||||    
T  9264077 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttatatactcttctcaagagtcttatctatccgatgt 9264176  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaata 254  Q
    |||| || ||||||| |||||| ||    ||||||||||  ||| ||| ||||| |||||||||||    
T  9264177 gggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaata 9264242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 19820519 - 19820592
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| || ||||||||| |||| |||| | |||| | ||||||||| |||||||| ||||||||||||    
T  19820519 ttgaaatttgaggcctaactcatccttacaaaaccggtttgtaaggtgaggattgtctcctctttataaactct 19820592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 29763687 - 29763792
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||| |||||||| |||| |||| |||| | ||| || || || |||||||||||| |||||||||||| || || | ||| | ||||| |||||    
T  29763687 ttgaaatttagggtctaattcatccttacaaaaccggttcataagatggggagtgtctcctctttataaactcttatcaagagtcttatctatccgatgt 29763786  T
Q  189 gggatt 194  Q
    ||||||    
T  29763787 gggatt 29763792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 291
Target Start/End: Original strand, 40230419 - 40230627
Alignment:
Q  82 atgtttattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactat 181  Q
    |||||| ||||||||||||| ||||||||  |||| |||| | | |  | ||||||||| || ||||| ||||||||||||||| || | ||| | ||||    
T  40230419 atgtttgttgaaatttggggcctaactcaaccttacaaaaccggctcgtaaggtgaggattg-ctcctctttataaactctcatcaagagtctcatctat 40230517  T
Q  182 ctgatgtgggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaac 281  Q
    | ||||||| | || ||||||| |||||| ||    || |||||||  ||| ||| ||||| |||||||||||  ||||||  |  |||||||||||| |    
T  40230518 ccgatgtggaacttgggtttttcccaatacacccccctaacgcccatcactctttgggcttggtgcgtgaataggtaggtggcccctgaattcgacaagc 40230617  T
Q  282 tctgatacca 291  Q
    | ||||||||    
T  40230618 tttgatacca 40230627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 44573752 - 44573679
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  44573752 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 44573679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 44574049 - 44573976
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  44574049 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 44573976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 50692639 - 50692518
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| |||||||||||| || || | |||   ||||| |||||    
T  50692639 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttatcaagagtcttgtctatccgatgt 50692540  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  50692539 gggacttgggtttttcccaata 50692518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 4191111 - 4191186
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||| ||||||||| |||| |||| | | || | |||| |||| |||||||| ||||||||||||    
T  4191111 tattgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtcaggattgtctcctctttataaactct 4191186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 50692436 - 50692314
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||  | || | |||   ||||| |||||    
T  50692436 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttgtctatccgatgt 50692337  T
Q  189 gggatttaggttttttccaatat 211  Q
    |||| || ||||||| |||||||    
T  50692336 gggacttgggtttttcccaatat 50692314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 1715643 - 1715598
Alignment:
Q  100 ggtctaactcattcttataaaatcagtttatgaggtgaggagtgtc 145  Q
    |||||||||||| |||| |||||||||| || ||||||||||||||    
T  1715643 ggtctaactcatccttacaaaatcagttcataaggtgaggagtgtc 1715598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 4029635 - 4029708
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | |||| | |||||| || ||| |||| ||||||||||||    
T  4029635 ttgaaatttggggcctaactcatccttacaaaaccggtttgtaaggtgaagattgtatcctctttataaactct 4029708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 11414476 - 11414403
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| || ||||||||| |||| |||| | | || | ||||||||| |||||||| ||||||||||||    
T  11414476 ttgaaatttgaggcctaactcatccttacaaaaccggcttctaaggtgaggattgtctcctctttataaactct 11414403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 21750588 - 21750515
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| ||||   | || | |||||||||||| ||||| ||||||||||||    
T  21750588 ttgaaatttggggcctaactcatccttacaaaactggcttgtaaggtgaggagtgcctcctctttataaactct 21750515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 22407432 - 22407505
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| |||||| |||||    
T  22407432 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttatatactct 22407505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 22407639 - 22407712
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| |||||| |||||    
T  22407639 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttatatactct 22407712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 24539267 - 24539202
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctattta 154  Q
    ||||| ||||||| ||||||||| |||| |||||| | || | |||||||||||||||||| ||||    
T  24539267 ttgaagtttggggcctaactcatccttacaaaatcggcttgtaaggtgaggagtgtctcctcttta 24539202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 34715446 - 34715519
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||  |||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  34715446 ttgaaatttggggcataactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 34715519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 43101362 - 43101435
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| | ||||||| |||| |||| |  ||| | |||||||||||| ||||| ||||||||||||    
T  43101362 ttgaaatttggggccaaactcatccttacaaaaccgatttgtaaggtgaggagtgcctcctctttataaactct 43101435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 44461401 - 44461332
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaa 158  Q
    ||||||||| |||  ||||| ||||||||||||   ||| || |||||||||||||||||| ||||||||    
T  44461401 ttgaaatttagggcttaactaattcttataaaactggttcataaggtgaggagtgtctcctctttataaa 44461332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 45443393 - 45443320
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||| ||||| ||||| ||||||||||||    
T  45443393 ttgaaatttggggcctaactcatccttaaaaaaccggcttgtaaggtgaagagtgcctcctctttataaactct 45443320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 26927018 - 26926900
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtg 189  Q
    ||||||| | || ||||||||| |||| |||| | ||| || ||||||||| |||||||| | |||||||||| || || | ||| | ||||||||||||    
T  26927018 tgaaattggaggcctaactcatcctta-aaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttatctatctgatgtg 26926920  T
Q  190 ggatttaggttttttccaata 210  Q
    |||  | ||||||||||||||    
T  26926919 ggacat-ggttttttccaata 26926900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 46139345 - 46139313
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaa 121  Q
    |||||||||||||||||||||||||||| ||||    
T  46139345 ttgaaatttggggtctaactcattcttacaaaa 46139313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 48685349 - 48685381
Alignment:
Q  130 tgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||||||||| ||||||||||||    
T  48685349 tgaggtgaggagtgtctcctctttataaactct 48685381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 1234039 - 1233917
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||||||||||||||||  | | |||| ||| || |||||||||||||||||||| ||||||||||||||| || | ||| | ||||| |||||    
T  1234039 ttgaaatttggggtctaactcatcatcacaaaaccagcttgtgaggtgaggagtgtctcctctttataaactctcatcaagagtctcatctatccgatgt 1233940  T
Q  189 gggatttaggttttttccaatat 211  Q
    |||| || ||||||| |||||||    
T  1233939 gggacttgggtttttaccaatat 1233917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 254
Target Start/End: Original strand, 22892680 - 22892844
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtg 189  Q
    |||||||||||| ||||||||| |||| |||| | | || ||||| |||||||||||||| |||||||| |||||| || | ||| |  ||| |||||||    
T  22892680 tgaaatttggggcctaactcatccttacaaaaccggcttgtgaggcgaggagtgtctcctctttataaagtctcatcaagagtctcatttatttgatgtg 22892779  T
Q  190 ggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaata 254  Q
    ||| || ||||||| |||||| || |   |||||||||| ||| ||| ||||| |||| ||||||    
T  22892780 ggacttgggtttttcccaatacacctccgtcacgcccaacactctttgggcttggtgcatgaata 22892844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 22892422 - 22892500
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcat 165  Q
    ||||||||||||||| ||||||||| |||| |||| | | || |||||||||||||| ||||| |||||||||||||||    
T  22892422 tattgaaatttggggcctaactcatccttacaaaaccggattgtgaggtgaggagtgcctcctctttataaactctcat 22892500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 5222807 - 5222686
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||| ||||||||||||| ||||||||| | | || | ||||||||| |||||||| |  ||||||||| || || | ||| | ||||| |||||    
T  5222807 ttgaaatttagggtctaactcatccttataaaaccggcttgtaaggtgaggattgtctcctctacataaactcttatcaagagtcttatctatcagatgt 5222708  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| |||||||||| ||||||    
T  5222707 gggacttaggtttttcccaata 5222686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 17419900 - 17419827
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  17419900 ttgaaatttggggtctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 17419827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 21638257 - 21638330
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| ||  || | |||||||||||||||||| ||||||||||||    
T  21638257 ttgaaatttggggcctaactcatccttacaaaaccatcttgtaaggtgaggagtgtctcctctttataaactct 21638330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 33879769 - 33879842
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| ||| || | |||||||||||| ||||| ||||||||||||    
T  33879769 ttgaaatttggggcctaactcatccttacaaaaccagcttgtaaggtgaggagtggctcctctttataaactct 33879842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 33964486 - 33964413
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| ||| || | |||||||||||| ||||| ||||||||||||    
T  33964486 ttgaaatttggggcctaactcatccttacaaaaccagcttgtaaggtgaggagtggctcctctttataaactct 33964413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 22892884 - 22892962
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcat 165  Q
    ||||||||||| |||  |||| ||| |||| |||  ||| || |||||||||||||||||||| |||||||||||||||    
T  22892884 tattgaaatttagggcgtaacgcatccttacaaatccagcttgtgaggtgaggagtgtctcctctttataaactctcat 22892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 2697322 - 2697395
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||||||||| | |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  2697322 ttgaaatttggggtctaactcgtccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 2697395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 11018967 - 11018894
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| |||||||||||| |||| ||||||  ||| ||||| || || |||||||| ||||||||||||    
T  11018967 ttgaaatttgaggtctaactcatccttacaaaatcgatttgtgaggggaagattgtctcctctttataaactct 11018894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 38871146 - 38871267
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||| || ||||| ||| |||| |||| | |||  | |||||||||||| ||||| |||||||||| | || || | ||| | |||||||||||    
T  38871146 ttgaaatttgaggcctaacgcatccttacaaaaccggttcttaaggtgaggagtgcctcctctttataaacttttatcaagagtcttatctatctgatgt 38871245  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  38871246 gggacttgggtttttcccaata 38871267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 45403553 - 45403480
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| || ||||||||| |||| |||| ||| || | |||||||||||| ||||| ||||||||||||    
T  45403553 ttgaaatttgaggcctaactcatccttacaaaaccagcttgtaaggtgaggagtgcctcctctttataaactct 45403480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 15392223 - 15392144
Alignment:
Q  83 tgtttattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||| ||||||||||||| ||||||||| |||| |||||| | || | ||||||||| || ||||| |||||| |||||    
T  15392223 tgtttgttgaaatttggggcctaactcatccttacaaaatcggcttgtaaggtgaggattgcctcctctttatatactct 15392144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 24131874 - 24131945
Alignment:
Q  91 gaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||||||||||||||||||||   | || | || |||||| || ||||| ||||||||||||    
T  24131874 gaaatttggggtctaactcattcttataaaactggcttgtaagttgaggattgcctcctctttataaactct 24131945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 34076715 - 34076664
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgagga 140  Q
    ||||||||||||| ||||||||| ||||||||||| |||| ||| |||||||    
T  34076715 ttgaaatttggggcctaactcatccttataaaatcggtttgtgaagtgagga 34076664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 38870940 - 38871143
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||| || ||||||||| |||| |||| | |||  | |||||||||||| ||||  |||||||||| | || || | ||| | | |||||||||    
T  38870940 ttgaaatttgaggcctaactcatccttacaaaaccggttcttaaggtgaggagtgcctccactttataaacttttatcaagagtcttatcgatctgatgt 38871039  T
Q  189 gggatttaggttttttcc-aatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgat 287  Q
    |||| || || ||||||| |||| ||    |||||| |||  ||| ||| ||||| ||||||| |||  ||||||  | ||||||||||||| |||||||    
T  38871040 gggacttggggtttttcccaatacacccccctcacgtccagcactctttgggcttggtgcgtggataggtaggtggcccttgaattcgacaagctctgat 38871139  T
Q  288 acca 291  Q
    ||||    
T  38871140 acca 38871143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 27957801 - 27957871
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    |||||||||||||||||||||| |||| |||| | | || |  ||||||||| ||||||| ||||||||||    
T  27957801 tgaaatttggggtctaactcatccttacaaaaccggcttgtacggtgaggagcgtctcctctttataaact 27957871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 35926239 - 35926301
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctat 151  Q
    ||||||||||||| ||||||||| |||| |||| ||| || | |||||||||||| |||||||    
T  35926239 ttgaaatttggggcctaactcatccttacaaaaccagcttgtaaggtgaggagtgcctcctat 35926301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 4022116 - 4022189
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| ||||   | || | |||||||||||| ||||| ||||||||||||    
T  4022116 ttgaaatttggggcctaactcatccttacaaaactggcttgtaaggtgaggagtgcctcctctttataaactct 4022189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 8520084 - 8520157
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||||||||||||  ||| |||| | | || | |||||||||||| ||| | ||||||||||||    
T  8520084 ttgaaatttggggtctaactcatctttacaaaaccggcttgtaaggtgaggagtgcctcttctttataaactct 8520157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 10017311 - 10017420
Alignment:
Q  81 catgtttattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaacta 180  Q
    |||||| |||||||||| ||| |||||| |  | || |||||| ||| || ||||||||||||  |||| |||||||||||| || || | ||| | |||    
T  10017311 catgttgattgaaatttagggcctaacttagccgtacaaaatcggttcataaggtgaggagtgcttcctctttataaactcttatcaagagtcttatcta 10017410  T
Q  181 tctgatgtgg 190  Q
    ||||||||||    
T  10017411 tctgatgtgg 10017420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 20735635 - 20735566
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaa 158  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||    
T  20735635 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaa 20735566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 31305824 - 31305751
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||| | ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  31305824 ttgaaatttggagcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 31305751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 37600985 - 37600912
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||  |||||||| |||| |||| | | |||| |||||||||||| | ||| ||||||||||||    
T  37600985 ttgaaatttggggcttaactcatccttacaaaaccggcttataaggtgaggagtgccgcctctttataaactct 37600912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 39649075 - 39649196
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||||||  |||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||  | || | ||| | ||||| |||||    
T  39649075 ttgaaatttggggcataactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttatctatccgatgt 39649174  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  39649175 gggacttgggtttttcccaata 39649196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 43361543 - 43361616
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||| |||||||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||    
T  43361543 ttgaaattgggggtctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactct 43361616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 3774061 - 3774125
Alignment:
Q  96 ttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    ||||||||||||||||  |||||||||| ||| || |||||| ||  ||||||| ||||||||||    
T  3774061 ttggggtctaactcatctttataaaatcggttcataaggtgaagaaggtctcctctttataaact 3774125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 24382392 - 24382472
Alignment:
Q  130 tgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaata 210  Q
    |||| ||||||||| ||||| ||||||||||||||| || | ||| |  |||| ||||| |||||| ||||||| ||||||    
T  24382392 tgagatgaggagtgcctcctctttataaactctcatcaagagtctcatttatccgatgttggatttgggtttttcccaata 24382472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 291
Target Start/End: Complemental strand, 24558901 - 24558699
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| ||| || | ||||||||| |||||||| ||||||||||||  |||| | ||| | ||||| |||||    
T  24558901 ttgaaatttggggcctaactcatccttacaaaaccagcttgtaaggtgaggattgtctcctctttataaactcttctaaagagtcttatctatccgatgt 24558802  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    | ||  |||||||||||||||| ||     |||||||||  ||| ||| ||||| ||||||||||   ||||||  |  |||||||||||| ||||||||    
T  24558801 gagacataggttttttccaatacacccccgtcacgcccagcactctttgggcttggtgcgtgaatcggtaggtggcccatgaattcgacaagctctgata 24558702  T
Q  289 cca 291  Q
    |||    
T  24558701 cca 24558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 15102615 - 15102737
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcag-tttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatg 187  Q
    ||||||||||||||||||||||| |||| |||| | | ||| ||| |||||||||| ||||| ||||||||||||||| || | ||| | |||| |||||    
T  15102615 ttgaaatttggggtctaactcatccttacaaaaccggctttgtgaagtgaggagtgcctcctctttataaactctcatcaagagtctcatctatttgatg 15102714  T
Q  188 tgggatttaggttttttccaata 210  Q
    ||||| || ||||||| ||||||    
T  15102715 tgggacttgggtttttcccaata 15102737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 15293866 - 15293963
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatg 187  Q
    ||||||||||||||||| |||| ||||||||| | | || ||||||||||| ||||||   ||||||||||||||| || ||||||| ||||||||||    
T  15293866 tgaaatttggggtctaattcatccttataaaaccggcttgtgaggtgaggaatgtctctgctttataaactctcatcaagaatctaatctatctgatg 15293963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 25999141 - 25999065
Alignment:
Q  84 gtttattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    |||| ||||||||||||| |||||||||||||| |||| | ||| || |||||||||||||||||| ||||||||||    
T  25999141 gtttgttgaaatttggggcctaactcattcttacaaaaccggttcataaggtgaggagtgtctcctctttataaact 25999065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 26098872 - 26098796
Alignment:
Q  84 gtttattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    |||| ||||||||||||| |||||||||||||| |||| | ||| || |||||||||||||||||| ||||||||||    
T  26098872 gtttgttgaaatttggggcctaactcattcttacaaaaccggttcataaggtgaggagtgtctcctctttataaact 26098796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 11317154 - 11316959
Alignment:
Q  96 ttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggattt 195  Q
    |||||| ||||||||  |||| |||| | | || ||| |||||||||| | ||| ||||||||||||||| || | | | | ||||| ||||||||| ||    
T  11317154 ttgggggctaactcaaccttacaaaaccggcttgtgaagtgaggagtgccccctctttataaactctcatcaagagtttcatctatccgatgtgggactt 11317055  T
Q  196 aggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
     ||||||| |||||| ||    ||||||||||  ||| ||| ||||| |||||||||||  ||||||  | ||||||||||||| |||||||||||    
T  11317054 gggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtaggtggcccttgaattcgacaagctctgatacca 11316959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 26098661 - 26098590
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    ||||||||||||| |||||||||||||| |||| | ||| || |||||||||||||||||| ||||||||||    
T  26098661 ttgaaatttggggcctaactcattcttacaaaagcggttcataaggtgaggagtgtctcctctttataaact 26098590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 278
Target Start/End: Original strand, 15102745 - 15102931
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||||||||  |||||| |||| |||| | |||| ||| |||||||||| ||||| ||||||||||||||| || | ||| | |||||||||||    
T  15102745 ttgaaatttggggtc--actcatccttacaaaaccggtttgtgaagtgaggagtgactcctctttataaactctcatcaagagtctcatctatctgatgt 15102842  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgaca 278  Q
     ||| || ||||||| |||||| ||   | |||||||||| ||| ||| || || ||||||||||   ||||||  | ||||||||||||    
T  15102843 -ggacttgggtttttcccaatacacccctgtcacgcccaacactctttgggtttggtgcgtgaatcggtaggtggcccttgaattcgaca 15102931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 26098455 - 26098334
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | ||| || |||||||||||||||||| |||||||||| | || |  | ||| | ||||| |||||    
T  26098455 ttgaaatttggggcctaactcatccttacaaaagcggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttatctatccgatgt 26098356  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  26098355 gggacttgggtttttcccaata 26098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 12134474 - 12134547
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | |||| | |||| ||||||||||||| ||||||||||||    
T  12134474 ttgaaatttggggcctaactcatccttacaaaaccggtttgtaaggttaggagtgtctcctctttataaactct 12134547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 25998930 - 25998809
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| |||| |||| |||| |||| | ||| || |||||||||||||||||| |||||||||| | || |  | ||| | ||||| |||||    
T  25998930 ttgaaatttggggcctaaatcatccttacaaaagcggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttatctatccgatgt 25998831  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  25998830 gggacttgggtttttcccaata 25998809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 10733430 - 10733502
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||| ||||||||| |||| |||| | | || | |||||||||||||||||| ||||||||||||    
T  10733430 tgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgtctcctctttataaactct 10733502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 1744833 - 1744906
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  1744833 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 1744906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 11313373 - 11313538
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| ||||   | || | ||||||||| || ||||| |||||| |||||  | || | ||| | ||||| |||||    
T  11313373 ttgaaatttggggcctaactcatccttacaaaactggcttgtaaggtgaggattgcctcctctttatatactcttctcaagagtcttatctatccgatgt 11313472  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaata 254  Q
    ||||||| ||||||| |||||| ||    ||||||||||  ||| ||| ||||| |||||||||||    
T  11313473 gggatttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaata 11313538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 30527027 - 30526954
Alignment:
Q  218 ctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    |||||| |||| ||| ||| ||||| |||||||||||  ||||||  | |||||||||||||||||||||||||    
T  30527027 ctcacgtccaacactctttgggcttggtgcgtgaatagttaggtgtcccttgaattcgacaaactctgatacca 30526954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 10418333 - 10418405
Alignment:
Q  93 aatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcat 165  Q
    ||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| |||||||||||||||    
T  10418333 aatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactctcat 10418405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 18494354 - 18494430
Alignment:
Q  178 ctatctgatgtgggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaata 254  Q
    |||||||||||||||||| ||||||| |||||| ||    ||||||||||  ||| ||||||||| |||||||||||    
T  18494354 ctatctgatgtgggatttgggtttttcccaatacacccccctcacgcccagcactctttaggcttggtgcgtgaata 18494430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 291
Target Start/End: Original strand, 29742470 - 29742627
Alignment:
Q  132 aggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaatatacttttctcacgcccaatac 231  Q
    ||||||||| || ||||| |||||||||| |||| || | ||| ||  ||| ||||||||| ||| |||||| | |||| ||    ||||||||||| ||    
T  29742470 aggtgaggattgcctcctctttataaactttcatcaagagtcttaa--atccgatgtgggacttaagtttttcctaatacacccccctcacgcccaacac 29742567  T
Q  232 tatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    | ||| ||||| |||||||||||  || |||  | ||||||||||||| |||||||||||    
T  29742568 tctttgggcttggtgcgtgaataggtaagtggcccttgaattcgacaagctctgatacca 29742627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 8144128 - 8144057
Alignment:
Q  91 gaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  8144128 gaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 8144057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 30526951 - 30526836
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||| |||| ||||||||  |||| |||| ||| || ||| |||||||||  | ||| ||||||||||||||| || | ||| | ||||| |||||    
T  30526951 ttgaaattgggggcctaactcaaccttacaaaaccagcttgtgaagtgaggagttccccctctttataaactctcatcaagagtctcatctatccgatgt 30526852  T
Q  189 ggga-tttaggttttt 203  Q
    |||| |||||||||||    
T  30526851 gggactttaggttttt 30526836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 12124695 - 12124753
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctc 147  Q
    ||||||||||||| ||||||||| |||| |||||||| || | || |||||||||||||    
T  12124695 ttgaaatttggggcctaactcatccttacaaaatcagcttgtaagatgaggagtgtctc 12124753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 19291909 - 19292023
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||| | ||||||||| |||| |||| ||  |||| ||||||||| |||||||| | || ||||||| || || | ||| | ||||| |||||    
T  19291909 ttgaaatttggagcctaactcatccttacaaaaccaacttataaggtgaggattgtctcctctatacaaactcttatcaagagtcttatctatccgatgt 19292008  T
Q  189 gggatttaggttttt 203  Q
    |||| || |||||||    
T  19292009 gggactttggttttt 19292023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 23591631 - 23591537
Alignment:
Q  100 ggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatt 194  Q
    |||||||||||| |||| |||||| | || | |||||| ||||||||||| | |||||||| |  | || ||||| | |||||||||||||||||    
T  23591631 ggtctaactcatccttacaaaatcggcttgtaaggtgaagagtgtctcctttatataaacttttctcaagaatcttatctatctgatgtgggatt 23591537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 30539533 - 30539419
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||| ||| |||| |||| | | |||| || ||||||||| |||   |||||||||||| || |||| ||| | ||||| |||||    
T  30539533 ttgaaatttggggcctaacccatccttacaaaaccgggttataagatgaggagtgcctcacctttataaactcttatcaaaagtcttatctatccgatgt 30539434  T
Q  189 gggatttaggttttt 203  Q
    |||| || |||||||    
T  30539433 gggacttgggttttt 30539419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 16877001 - 16877074
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||    
T  16877001 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactct 16877074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 17096689 - 17096762
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||||||||||| |||| |||| | | || |  || ||||||| |||||| ||||||||||||    
T  17096689 ttgaaatttggggtctaactcatccttacaaaaccggcttgtacggcgaggagtttctcctctttataaactct 17096762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 19054606 - 19054533
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||| | ||||||||||||    
T  19054606 ttgaaatttggggactaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcatctttataaactct 19054533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 19712604 - 19712673
Alignment:
Q  93 aatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||| ||||||||| |||| |||| ||| || | ||||||||| || ||||| ||||||||||||    
T  19712604 aatttggggcctaactcatccttacaaaaccagcttgtaaggtgaggattgcctcctctttataaactct 19712673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 24055100 - 24055173
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||| | ||||||||||||    
T  24055100 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcgtctttataaactct 24055173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 28149906 - 28149833
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||    
T  28149906 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactct 28149833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 22875131 - 22875187
Alignment:
Q  91 gaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctc 147  Q
    ||||||| |||||||||||||||||| |||| |   |||| ||||||||||||||||    
T  22875131 gaaatttagggtctaactcattcttacaaaaccgacttataaggtgaggagtgtctc 22875187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 291
Target Start/End: Original strand, 6751537 - 6751698
Alignment:
Q  130 tgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaatatacttttctcacgcccaat 229  Q
    |||||||||||||| ||||| ||| ||||||||||| || | ||| | ||||| ||| ||||| || ||||||| |||||| ||    ||||||||||      
T  6751537 tgaggtgaggagtgcctcctctttgtaaactctcatcaagagtctcatctatccgatttgggacttgggtttttcccaatacacccccctcacgcccagc 6751636  T
Q  230 actatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    ||| ||| ||||| |||||||||||  ||||||| | ||||||||||||| |||||||||||    
T  6751637 actctttgggcttggtgcgtgaataggtaggtgacccttgaattcgacaagctctgatacca 6751698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 13310416 - 13310530
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | |||| ||| |||||||||||||||| ||||||||||||| | || | ||| | |||||||| ||    
T  13310416 ttgaaatttggggcctaactcatccttacaaaaccggtttgtgaagtgaggagtgtctcctctttataaactctcgtcaagagtctcatctatctgacgt 13310515  T
Q  189 gggatttaggttttt 203  Q
    |||| || |||||||    
T  13310516 gggacttgggttttt 13310530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 291
Target Start/End: Complemental strand, 16565211 - 16565010
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||| || ||||||||| | || |||||| ||| || |||||||||||| |||||||||||||||||| || || | ||| | ||||| |||||    
T  16565211 ttgaaatttgaggcctaactcatccgtaaaaaatcggttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgt 16565112  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    |||| || ||||||| |||||| ||    ||||||||||| ||| ||| ||||| || |||| ||   ||||||  | |||||||||| || ||||||||    
T  16565111 gggacttgggtttttcccaatacac-cccctcacgcccaacactctttgggcttggtccgtggattggtaggtggcccttgaattcgataagctctgata 16565013  T
Q  289 cca 291  Q
    |||    
T  16565012 cca 16565010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 16600451 - 16600652
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||| || ||||||||| | || |||||| ||| || |||||||||||| |||||||||||||||||| || || | ||| | ||||| |||||    
T  16600451 ttgaaatttgaggcctaactcatccgtaaaaaatcggttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgt 16600550  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    |||| || ||||||| |||||| ||    ||||||||||| ||| ||| ||||| || |||| ||   ||||||  | |||||||||| || ||||||||    
T  16600551 gggacttgggtttttcccaatacac-cccctcacgcccaacactctttgggcttggtccgtggattggtaggtggcccttgaattcgataagctctgata 16600649  T
Q  289 cca 291  Q
    |||    
T  16600650 cca 16600652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 33855809 - 33855683
Alignment:
Q  84 gtttattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatct 183  Q
    |||| ||||||||||||| |||||||||||||| |||| | ||| || |||||||||||||||||| |||||||||| | || |  | ||| | |||||     
T  33855809 gtttgttgaaatttggggcctaactcattcttacaaaaccggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttatctatcc 33855710  T
Q  184 gatgtgggatttaggttttttccaata 210  Q
    ||||||||| || ||||||| ||||||    
T  33855709 gatgtgggacttgggtttttcccaata 33855683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 43566076 - 43565996
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaa 170  Q
    ||||||||||||||||||| |||||||| |||||| | |||| |||||||||||||| ||| ||||||||||||||| ||||    
T  43566076 ttgaaatttggggtctaacccattcttacaaaatcggcttataaggtgaggagtgtcacct-tttataaactctcatcaaaa 43565996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 4257991 - 4258192
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||| || ||||||||| |||| ||||   ||| || |||||||||||| |||||||| ||||||||| || || | ||| | ||||| |||||    
T  4257991 ttgaaatttgaggcctaactcatccttaaaaaactggttcataaggtgaggagtgcctcctattgataaactcttatcaagagtcttatctatccgatgt 4258090  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    | || || ||||||| |||||| ||    ||||||||||| ||| ||| ||||| || |||| |||  ||||||  | ||||||||||||| ||||||||    
T  4258091 gagacttgggtttttcccaatacac-cccctcacgcccaacactctttgggcttggtacgtggataggtaggtggcccttgaattcgacaagctctgata 4258189  T
Q  289 cca 291  Q
    |||    
T  4258190 cca 4258192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 40703400 - 40703478
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcat 165  Q
    ||||||||||||||| ||||||||| |||| |||| | | || |||||||||||||| ||||| |||||||||||||||    
T  40703400 tattgaaatttggggcctaactcatccttacaaaaccggcttgtgaggtgaggagtgcctcctctttataaactctcat 40703478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 16565007 - 16564886
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||  || ||||||||| |||| |||| | ||| || |||||||||||| |||||||||||||||||| || || | ||| | ||||| |||||    
T  16565007 ttgaaatttaaggcctaactcatccttaaaaaaccggttcataaggtgaggagtgcctcctatttataaactcttattaagagtcttatctatccgatgt 16564908  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  16564907 gggacttgggtttttcccaata 16564886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 16600655 - 16600776
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||  || ||||||||| |||| |||| | ||| || |||||||||||| |||||||||||||||||| || || | ||| | ||||| |||||    
T  16600655 ttgaaatttaaggcctaactcatccttaaaaaaccggttcataaggtgaggagtgcctcctatttataaactcttattaagagtcttatctatccgatgt 16600754  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  16600755 gggacttgggtttttcccaata 16600776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 29780262 - 29780187
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||| ||||||||| ||||||||| |   || | |||||||||||||||||| ||||||||||||    
T  29780262 tattgaaatttggggcctaactcatccttataaaaccgacttgtaaggtgaggagtgtctcctctttataaactct 29780187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 6813069 - 6813271
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| || | |||| | | || |||| ||||||||| ||||| ||||||||||||||| || | ||  | ||||| |||||    
T  6813069 ttgaaatttggggcctaactcatcctcacaaaaccggcttgtgagttgaggagtgcctcctctttataaactctcatcaagagtcccatctatccgatgt 6813168  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    |||| ||  |||||| |||| | ||     ||| |||||  ||| ||| ||||| |||||||||||  ||||||  | ||||||||||||| ||||||||    
T  6813169 gggacttgtgtttttcccaacacacccccttcatgcccagcactctttgggcttggtgcgtgaatatgtaggtggcccttgaattcgacaagctctgata 6813268  T
Q  289 cca 291  Q
    |||    
T  6813269 cca 6813271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 1661182 - 1661255
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| |||||||||||||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  1661182 ttgaaatttggggcctaactcattcttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 1661255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 40703848 - 40703953
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgat 186  Q
    |||||||||||||||  |||||||| |||| |||  |   || |||||||||||||||||||| ||||||||||||||| || | ||| | ||||| |||    
T  40703848 tattgaaatttggggcataactcatccttacaaatccgacttgtgaggtgaggagtgtctcctctttataaactctcatcaagagtctcatctatccgat 40703947  T
Q  187 gtggga 192  Q
    ||||||    
T  40703948 gtggga 40703953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 6751741 - 6751821
Alignment:
Q  130 tgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaata 210  Q
    |||||||||||||| ||||| ||| ||||||||||| || ||||| | ||||| ||||||||| || ||||||| ||||||    
T  6751741 tgaggtgaggagtgcctcctctttgtaaactctcatcaagaatctcatctatccgatgtgggacttgggtttttcccaata 6751821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 40703644 - 40703719
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcat 165  Q
    ||||||| |||| ||||||||| |||| |||| | | || |||||||||||||||||||| |||||||| ||||||    
T  40703644 tgaaattaggggcctaactcatccttacaaaaccggcttgtgaggtgaggagtgtctcctctttataaagtctcat 40703719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 254
Target Start/End: Complemental strand, 6783151 - 6782986
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||  | || | ||| | ||||| |||||    
T  6783151 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttatctatccgatgt 6783052  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaata 254  Q
    | || || ||||||| |||||| ||    ||||||||||  ||| ||| ||||| |||||||||||    
T  6783051 gagacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaata 6782986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 28910145 - 28910072
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  28910145 ttgaaatttgggggctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 28910072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 34590641 - 34590568
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||  |||||||| |||| |||| | ||| || |||||||||||| ||||| ||||||||||||    
T  34590641 ttgaaatttggggcttaactcatccttacaaaaccggttcataaggtgaggagtgcctcctctttataaactct 34590568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 8585204 - 8585132
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactc 161  Q
    ||||||||||||||||||||||| |||| |||| ||| || | ||||||||||||   ||| |||||||||||    
T  8585204 ttgaaatttggggtctaactcatccttacaaaaccagcttgtaaggtgaggagtgctccctctttataaactc 8585132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 257256 - 257331
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||| ||||||||| |||| |||| | | |  | |||||||||||| ||||| ||||||||||||    
T  257256 tattgaaatttggggcctaactcatccttacaaaaccggctagtaaggtgaggagtgcctcctctttataaactct 257331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 6813274 - 6813396
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||  | || | |||| | | || |||||||||||||| ||||| ||||||||||||||| || | ||  | ||||||||||     
T  6813274 ttgaaatttggggcctaacttgtcctcacaaaaccggcttgtgaggtgaggagtgcctcctctttataaactctcatcaagagtcccatctatctgatgc 6813373  T
Q  189 gggatttaggttttttccaatat 211  Q
    |||| || || |||| |||||||    
T  6813374 gggacttggggttttcccaatat 6813396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 24426858 - 24426792
Alignment:
Q  96 ttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||| ||||||||||   |||||| ||||||||| | ||| || ||||||||||||    
T  24426858 ttggggtctaactcactcttataaaactggtttataaggtgaggaatatcttctctttataaactct 24426792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 12578451 - 12578524
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||||||||||| |||| ||||||   || | ||| |||||||| ||||| ||| ||||||||    
T  12578451 ttgaaatttggggtctaactcatccttacaaaatcgaattgtaaggcgaggagtgcctcctctttctaaactct 12578524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 23821450 - 23821523
Alignment:
Q  218 ctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    ||||||||||  ||| ||| ||||| |||||||||||  ||||| | | |||||||||||||||||| ||||||    
T  23821450 ctcacgcccatcactctttgggcttggtgcgtgaataggtaggtaacccttgaattcgacaaactctaatacca 23821523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 31374878 - 31374805
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||| |||||||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||    
T  31374878 ttgaaattcggggtctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactct 31374805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 258617 - 258545
Alignment:
Q  219 tcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    |||||||||| ||| ||| ||||| ||||||||||   ||||||  | ||||||||||||| |||||||||||    
T  258617 tcacgcccaacactctttgggcttggtgcgtgaatcggtaggtggcccttgaattcgacaagctctgatacca 258545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 33834061 - 33833942
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtg 189  Q
    ||||||| | || ||||||||| |||| |||| | ||| || ||||||||| |||||||| | |||||||||| || || | ||| | ||||| ||||||    
T  33834061 tgaaattggaggcctaactcatcctta-aaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttatctatccgatgtg 33833963  T
Q  190 ggatttaggttttttccaata 210  Q
    |||  | ||||||||||||||    
T  33833962 ggacatgggttttttccaata 33833942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 36092599 - 36092663
Alignment:
Q  98 ggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||| |||| |||| ||| || | |||||||||||| ||||| | ||||||||||    
T  36092599 ggggtctaactcatccttacaaaaccagcttgtaaggtgaggagtgcctcctctctataaactct 36092663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 40792806 - 40792854
Alignment:
Q  92 aaatttggggtctaactcattcttataaaatcagtttatgaggtgagga 140  Q
    |||||||||||||||||||| |||| |||||| | || |||||||||||    
T  40792806 aaatttggggtctaactcatccttacaaaatcggcttgtgaggtgagga 40792854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 291
Target Start/End: Complemental strand, 29113562 - 29113360
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| ||| || | ||||||||| || ||||| ||||||||||||  | || | ||| | |||||||||||    
T  29113562 ttgaaatttggggcctaactcatccttacaaaaccagcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttatctatctgatgt 29113463  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    ||||  | ||||||| |||||| ||     |||||||||  ||| ||| ||||| |||||||||| | ||||||  | |||||||||||||  |||||||    
T  29113462 gggacatgggtttttcccaatacacccccgtcacgcccagcactctttgggcttggtgcgtgaatcagtaggtggcccttgaattcgacaagttctgata 29113363  T
Q  289 cca 291  Q
    |||    
T  29113362 cca 29113360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 20441461 - 20441566
Alignment:
Q  103 ctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggtttt 202  Q
    ||||||||| |||||||||  || || |||||| ||||||||||| | ||||||||||||||| || ||||| | |||||| |||||||| || ||||||    
T  20441461 ctaactcatccttataaaactagcttgtgaggtaaggagtgtctcttctttataaactctcattaagaatctcatctatctaatgtgggacttgggtttt 20441560  T
Q  203 ttccaa 208  Q
    ||||||    
T  20441561 ttccaa 20441566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 291
Target Start/End: Complemental strand, 28246099 - 28245904
Alignment:
Q  96 ttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggattt 195  Q
    |||||| ||||||||| |||| |||| | ||||   ||||||||| || || || ||||||||||||||| || | ||| | ||||| ||||||||| ||    
T  28246099 ttggggcctaactcatccttacaaaaccggtttgcaaggtgaggattgccttctctttataaactctcatcaagagtctcatctatccgatgtgggactt 28246000  T
Q  196 aggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
     ||||||| |||||| ||    ||||||||||  ||| ||| || || |||||||||||  ||||||  | ||||||||||||| |||||||||||    
T  28245999 gggtttttcccaatacacccccctcacgcccagcactctttgggtttggtgcgtgaataggtaggtggcccttgaattcgacaagctctgatacca 28245904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 53864018 - 53863895
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||| |||||||||||| |||| |||| | ||| || |||||||||||||||||| |||||||||| | || |||| ||| | ||||| |||||    
T  53864018 ttgaaatttgtggtctaactcatccttacaaaaccggttcataaggtgaggagtgtctcctctttataaactattatcaaaagtcttatctatccgatgt 53863919  T
Q  189 gggatttaggttttttccaatata 212  Q
     ||| || |||||||  |||||||    
T  53863918 tggacttgggtttttctcaatata 53863895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 56511617 - 56511544
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||||| ||| || |||||||||||| ||||| ||||||||||||    
T  56511617 ttgaaatttggggcctaactcatccttacaaaatcggttcataaggtgaggagtgcctcctctttataaactct 56511544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 1922982 - 1923184
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||||||||| |||||| ||||||||| | | || |  ||||| || ||  |||| ||||||||||||  | || | ||| | |||||||||||    
T  1922982 ttgaaatttggggtctgactcatccttataaaaccggcttgtatggtgatgattgcttcctctttataaactcttctcaagagtcttatctatctgatgt 1923081  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    ||||  | ||||||| |||||| ||     |||||||||| ||| ||| ||||| |||||||||| | ||||||  | ||||||| ||||| ||||||||    
T  1923082 gggacatgggtttttcccaatacacccccgtcacgcccaacactctttgggcttggtgcgtgaatcattaggtggcccttgaattggacaagctctgata 1923181  T
Q  289 cca 291  Q
    |||    
T  1923182 cca 1923184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 17076987 - 17077132
Alignment:
Q  145 ctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttg 244  Q
    ||||| ||||| ||||||||| || | ||| | ||||| ||||||||| || ||||||| |||||| ||    ||||||||||  ||| ||||||||| |    
T  17076987 ctcctctttatgaactctcatcaagagtctcatctatccgatgtgggacttgggtttttcccaatacaccac-ctcacgcccatcactctttaggcttgg 17077085  T
Q  245 tgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    ||||||||||  ||||||  | ||||||||||||| |||||||||||    
T  17077086 tgcgtgaataggtaggtggcccttgaattcgacaagctctgatacca 17077132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 56511410 - 56511337
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | ||| || |||||||||||| ||||| ||||||||||||    
T  56511410 ttgaaatttggggcctaactcatccttacaaaaccggttcataaggtgaggagtgcctcctctttataaactct 56511337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 10390466 - 10390537
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    ||||||||||||||||||||||| |||| ||||   ||| || ||||||||| |||||||| ||||||||||    
T  10390466 ttgaaatttggggtctaactcatccttacaaaactggttcataaggtgaggaatgtctcctctttataaact 10390537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 400490 - 400563
Alignment:
Q  218 ctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    ||||||||||| | | ||| ||||| ||||||||| || ||||||| | ||||||||||||| |||||||||||    
T  400490 ctcacgcccaacattctttgggcttggtgcgtgaagaagtaggtgacccttgaattcgacaagctctgatacca 400563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 991317 - 991244
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||||||||||| |||| |||| | | || | |||||||||||| |||||  |||||||||||    
T  991317 ttgaaatttggggtctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctcattataaactct 991244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 29669354 - 29669427
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  29669354 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 29669427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 29669669 - 29669742
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||| |||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  29669669 ttgaaatttggggtttaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 29669742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 45427243 - 45427316
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  45427243 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 45427316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 52214728 - 52214655
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  52214728 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 52214655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 53740295 - 53740222
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  53740295 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 53740222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 6778667 - 6778739
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactc 161  Q
    |||||||||| |||||||||||  |||| |||| | | || ||||||||||| |||||||| |||||||||||    
T  6778667 ttgaaatttgaggtctaactcaaccttacaaaaccggcttgtgaggtgaggattgtctcctctttataaactc 6778739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 10390675 - 10390738
Alignment:
Q  97 tggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    ||||| ||||||||| |||||||||   ||| || |||||||||||||||||| ||||||||||    
T  10390675 tggggcctaactcatccttataaaactggttgataaggtgaggagtgtctcctctttataaact 10390738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 25753596 - 25753719
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||  ||||||||| |||| |||| | | || | ||||||||| || ||||| |||||||||||| || || | |||   ||||| |||||    
T  25753596 ttgaaatttgggacctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttatcaagagtcttgtctatccgatgt 25753695  T
Q  189 gggatttaggttttttccaatata 212  Q
    |||| || ||||||| ||||||||    
T  25753696 gggacttgggtttttcccaatata 25753719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 10390286 - 10390352
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttat 155  Q
    ||||||||||| ||||||||||| |||| ||||  |||| || ||||||||||||||| || |||||    
T  10390286 ttgaaatttggagtctaactcatccttacaaaactagttcataaggtgaggagtgtcttctctttat 10390352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 27272780 - 27272746
Alignment:
Q  257 taggtgatcattgaattcgacaaactctgatacca 291  Q
    |||||||||||||||||||||| ||||||||||||    
T  27272780 taggtgatcattgaattcgacagactctgatacca 27272746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 990660 - 990587
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| |   || | |||||||||||| ||||| ||||||||||||    
T  990660 ttgaaatttggggcctaactcatccttacaaaaccgacttgtaaggtgaggagtgcctcctctttataaactct 990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 13254496 - 13254423
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||| | ||||||||||||    
T  13254496 ttgaaatttggggcctaactcatgcttacaaaaccgggttgtaaggtgaggagtgcctcatctttataaactct 13254423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 23018583 - 23018510
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||    
T  23018583 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggaatgcctcctctttataaactct 23018510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 23350911 - 23350791
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||||||  |||||||| |||||||||   | || | ||||||||| |||||||| |||||| ||||| || || | ||| |  |||| |||||    
T  23350911 ttgaaatttggggattaactcat-cttataaaacgggcttgtaaggtgaggattgtctcctctttatatactcttatcaagagtcttatttatccgatgt 23350813  T
Q  189 gggatttaggttttttccaata 210  Q
    ||||||| ||||||| ||||||    
T  23350812 gggatttgggtttttcccaata 23350791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 27048399 - 27048472
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||  ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  27048399 ttgaaatttgggacctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 27048472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 33629772 - 33629651
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| |||||||||  | | |||| | | || ||| |||||||||  ||||||||||||||||||||| || | ||| | |||||  ||||    
T  33629772 ttgaaatttggggcctaactcatcgtcacaaaaccggcttgtgatgtgaggagtacctcctatttataaactctcatcaagagtctcatctatccaatgt 33629673  T
Q  189 gggatttaggttttttccaata 210  Q
    || | || ||||||| ||||||    
T  33629672 ggaacttgggtttttcccaata 33629651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 33629848 - 33629775
Alignment:
Q  218 ctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    ||||||||||  ||| ||| ||||| |||||||||||  |||||| || ||||| ||||||| |||||||||||    
T  33629848 ctcacgcccagcactctttgggcttggtgcgtgaataggtaggtggtccttgaagtcgacaagctctgatacca 33629775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 35269116 - 35269051
Alignment:
Q  97 tggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||| ||||||||| |||| |||||||| || | ||||||||||||  |||| ||||||||||||    
T  35269116 tggggcctaactcatccttacaaaatcagcttgtaaggtgaggagtgcttcctctttataaactct 35269051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 43943786 - 43943665
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||| |||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||  | || | ||| | ||||| |||||    
T  43943786 ttgaaattgggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttatctatccgatgt 43943687  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  43943686 gggacttgggtttttcccaata 43943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 45426927 - 45427000
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| |   || | |||||||||||| ||||| ||||||||||||    
T  45426927 ttgaaatttggggcctaactcatccttacaaaaccgacttgtaaggtgaggagtgcctcctctttataaactct 45427000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 51469594 - 51469521
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| | || | | || | |||||||||||| ||||| ||||||||||||    
T  51469594 ttgaaatttggggcctaactcatccttacacaaccggcttgtaaggtgaggagtgcctcctctttataaactct 51469521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 53386103 - 53386176
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| |||||||||||| |||| |||| |   || | ||||||||| |||||||| ||||||||||||    
T  53386103 ttgaaatttgaggtctaactcatccttacaaaaccgacttgtaaggtgaggaatgtctcctctttataaactct 53386176  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 34205984 - 34206052
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataa 157  Q
    ||||||||||||  ||||||||| |||| |||| ||| || | |||||||||||| ||||| |||||||    
T  34205984 ttgaaatttgggacctaactcatccttacaaaaccagcttgtaaggtgaggagtgcctcctctttataa 34206052  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 36037305 - 36037200
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgat 186  Q
    ||||||||||||||||||||||||| |||| |||| | | || ||||||||||||||  |||| ||||||||||||||| || | ||| | ||||| |||    
T  36037305 tattgaaatttggggtctaactcatccttacaaaaccggcttgtgaggtgaggagtgcatcctctttataaactctcatcaagagtctcatctatccgat 36037206  T
Q  187 gtggga 192  Q
    ||||||    
T  36037205 gtggga 36037200  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 36039785 - 36039899
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||||||||||||| |||| |||| | | || ||||||||| ||||  |||| ||||||||||||||| || | ||| | ||||| |||||    
T  36039785 ttgaaatttggggtctaactcatccttacaaaaccggcttgtgaggtgagtagtgcatcctctttataaactctcatcaagagtctcatctatccgatgt 36039884  T
Q  189 gggatttaggttttt 203  Q
    | ||||| |||||||    
T  36039885 gagatttgggttttt 36039899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 7622007 - 7621934
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||||||  |||| ||| |||||||||||||| | ||||||||||    
T  7622007 ttgaaatttggggcctaactcatccttacaaaatcaacttataaggagaggagtgtctcctctctataaactct 7621934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 30066095 - 30066036
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcc 148  Q
    ||||||||||||| ||||||||| |||| |||| ||||| || |||||||||||||||||    
T  30066095 ttgaaatttggggcctaactcatccttacaaaaccagttcataaggtgaggagtgtctcc 30066036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 10989025 - 10989146
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||  | || | |||   ||| |||||||    
T  10989025 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttgtctacctgatgt 10989124  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||||||||||    
T  10989125 gggacttgggttttttccaata 10989146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 10989232 - 10989353
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||  | || | |||   ||||| |||||    
T  10989232 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttgtctatccgatgt 10989331  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||||||||||    
T  10989332 gggacttgggttttttccaata 10989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 18905969 - 18905896
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  18905969 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 18905896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 20298507 - 20298580
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| |||||||||  ||| |||| ||| || | |||||||||||| ||||| ||||||||||||    
T  20298507 ttgaaatttggggcctaactcatcattacaaaaccagcttgtaaggtgaggagtgcctcctctttataaactct 20298580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 21085139 - 21085212
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| |||||||||  ||| |||| ||| || | |||||||||||| ||||| ||||||||||||    
T  21085139 ttgaaatttggggcctaactcatcattacaaaaccagcttgtaaggtgaggagtgcctcctctttataaactct 21085212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 30176455 - 30176576
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||| |||| ||||||||| |||| |||| | | || |||||||| ||||| ||||| ||||||||||||||| || | |||   ||||| |||||    
T  30176455 ttgaaattcggggcctaactcatccttacaaaaccggcttgtgaggtgaagagtgcctcctctttataaactctcatcaagagtctcgtctatccgatgt 30176554  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| ||  |||||| ||||||    
T  30176555 gggacttgagtttttcccaata 30176576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 32931514 - 32931441
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  32931514 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 32931441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 36997279 - 36997206
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  36997279 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 36997206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 22451461 - 22451385
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcat 165  Q
    |||||||||||||  |||||||| |||| |||| | | || ||||||||| |||||||||| |||||||| ||||||    
T  22451461 ttgaaatttggggcataactcatccttacaaaaccggcttgtgaggtgagaagtgtctcctctttataaattctcat 22451385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 34248470 - 34248399
Alignment:
Q  91 gaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  34248470 gaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 34248399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 291
Target Start/End: Original strand, 15010812 - 15011017
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| ||||||||| | | || | ||||||||| || ||||| |||||||| |||  | || | |||   ||||| |||||    
T  15010812 ttgaaatttggggcctaactcatccttataaaaccggcttgtaaggtgaggattgcctcctctttataaattcttctcaagagtcttgtctatccgatgt 15010911  T
Q  189 ggga-tttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaa--taggtgatcattgaattcgacaaactctg 285  Q
    |||| ||  ||||||| |||||| ||    ||||||||||  ||| ||| ||||| ||||||||||| |  |||| |  | ||||||||||||| |||||    
T  15010912 gggacttggggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaatagatttaggcggcccttgaattcgacaagctctg 15011011  T
Q  286 atacca 291  Q
    ||||||    
T  15011012 atacca 15011017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 23027822 - 23027892
Alignment:
Q  92 aaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| |||||||||||||| |||| | | || | |||||||||||| ||||| ||||||| ||||    
T  23027822 aaatttggggcctaactcattcttaaaaaaccggcttgtaaggtgaggagtgcctcctctttataagctct 23027892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 42228877 - 42228811
Alignment:
Q  96 ttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||||| |||| |||||| | || | ||||||||| || ||||| ||||||||||||    
T  42228877 ttggggtctaactcatccttacaaaatcggcttgtaaggtgaggattgcctcctctttataaactct 42228811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 20760651 - 20760724
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | |||| | ||||||||| || ||| | ||||||||||||    
T  20760651 ttgaaatttggggcctaactcatccttacaaaaccggtttgtaaggtgaggattgcctcatctttataaactct 20760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 22277637 - 22277564
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||  |||||||| |||| |||| | | || | ||||||| |||||||||| ||||||||||||    
T  22277637 ttgaaatttggggattaactcatccttacaaaaccggcttgtaaggtgagtagtgtctcctctttataaactct 22277564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 34248186 - 34248117
Alignment:
Q  93 aatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  34248186 aatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 34248117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 43599424 - 43599351
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||    
T  43599424 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactct 43599351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 43984307 - 43984380
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || |  ||||||||||| ||||| ||||||||||||    
T  43984307 ttgaaatttggggcctaactcatccttacaaaaccggcttgtatggtgaggagtgcctcctctttataaactct 43984380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1138 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 288
Target Start/End: Original strand, 1864 - 2064
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||| |||||||||||| |||| |||| | | || | |||||| ||||| |||||   |||||||||| || || | ||| | ||||| |||||    
T  1864 ttgaaatttgaggtctaactcatgcttacaaaaccggcttgtaaggtgaagagtgcctcctcggtataaactcttatcaagagtcttatctatccgatgt 1963  T
Q  189 gggatttaggttttttc-caatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgat 287  Q
    | || || ||||||||| ||||| ||    ||||||||||| ||| ||| ||||| ||||||||||   ||||||| | |||||||||||||||||||||    
T  1964 gagacttgggttttttctcaatacacccccctcacgcccaacactctttgggcttggtgcgtgaatcggtaggtgacccttgaattcgacaaactctgat 2063  T
Q  288 a 288  Q
    |    
T  2064 a 2064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 18914152 - 18914318
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| |||||||||||||| |||| ||  || | ||||||||| |||||||| |||||||||| |  | || | |||  |||||| |||||    
T  18914152 ttgaaatttggggcctaactcattcttacaaaaccaacttgtaaggtgaggattgtctcctttttataaacttttctcaagagtcttgactatccgatgt 18914251  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataa 255  Q
    |||| || ||||||| |||||| ||    ||||||||||  ||| ||| ||||| ||||||||||||    
T  18914252 gggacttgggtttttcccaatacacccccctcacgcccagcactttttgggcttggtgcgtgaataa 18914318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 18914359 - 18914480
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| |||||||||||||| |||| ||| || | ||||||||| |||||||| |||||||||| |  | || | |||  |||||| |||||    
T  18914359 ttgaaatttggggcctaactcattcttacaaaaccagcttgtaaggtgaggattgtctcctttttataaacttttctcaagagtcttgactatccgatgt 18914458  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  18914459 gggacttgggtttttcccaata 18914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 20720544 - 20720662
Alignment:
Q  92 aaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtggg 191  Q
    |||||||||||||||||||| |||| |||| | | || | | |||||||||| ||||| |||| ||||||| || || ||||| | ||||||||||||||    
T  20720544 aaatttggggtctaactcatccttacaaaaccggcttgtaaagtgaggagtgcctcctttttacaaactcttatcaagaatcttatctatctgatgtggg 20720643  T
Q  192 atttaggttttttccaata 210  Q
    | ||  |||||| ||||||    
T  20720644 acttgagtttttcccaata 20720662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 36878396 - 36878318
Alignment:
Q  132 aggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaata 210  Q
    ||||||||| |||||||| |||||||||||| || |||| ||| | ||||||||||||||| || ||||||| ||||||    
T  36878396 aggtgaggattgtctcctgtttataaactcttatcaaaagtcttatctatctgatgtgggactttggtttttcccaata 36878318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 18107947 - 18107745
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgat 186  Q
    |||||||||| ||||||||| |||| |||| |||| | |||||| |||||||||||| ||||| |||||||| ||| || || | ||| | | ||  |||    
T  18107947 tattgaaatt-ggggtctaattcatccttacaaaaccggtttataaggtgaggagtgcctcctctttataaattcttatcaagagtcttatcgattcgat 18107849  T
Q  187 gtgggatttaggttttttccaatatacttttctcacgcccaatacta--tttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactct 284  Q
    |||||| || ||||||| |||||| ||   |||||||||||   |||  ||| ||||| ||||||| |||  |||||| || ||||||||||||| ||||    
T  18107848 gtgggaattgggtttttcccaatacac-cctctcacgcccatctctatttttgggcttggtgcgtggataggtaggtggtccttgaattcgacaagctct 18107750  T
Q  285 gatac 289  Q
    |||||    
T  18107749 gatac 18107745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 2716449 - 2716385
Alignment:
Q  96 ttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    |||||| ||||||||| |||| |||| ||| |||| |||||||||||||||||| ||||||||||    
T  2716449 ttggggcctaactcatccttacaaaaccagcttataaggtgaggagtgtctcctctttataaact 2716385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 39268102 - 39268010
Alignment:
Q  118 aaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaata 210  Q
    |||| ||||| || |||||||||||| |||||||||||||||||| || || | ||| | ||||| ||||||||| || ||||||| ||||||    
T  39268102 aaaaccagttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 39268010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 38376840 - 38376721
Alignment:
Q  93 aatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtggga 192  Q
    ||||||||| ||||||||| |||| |||| | | || | ||||||||| |||||||| ||||||||||||  | || | ||| | ||||| |||||||||    
T  38376840 aatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgtctcctctttataaactcttctcaagagtcttatctatccgatgtggga 38376741  T
Q  193 tttaggttttttccaatata 212  Q
     || ||||||| ||||||||    
T  38376740 cttgggtttttcccaatata 38376721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 13413697 - 13413576
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| ||||||||||||  | || | ||| | |||| ||||||    
T  13413697 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttatctatttgatgt 13413598  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  13413597 gggacttgggtttttcccaata 13413576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 28358026 - 28358099
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| |||||||| ||||||||||||    
T  28358026 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgtctcctctttataaactct 28358099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 38131877 - 38131804
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| |||||||| ||||||||||||    
T  38131877 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggaatgtctcctctttataaactct 38131804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 39268339 - 39268218
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||  || ||||||||| |||| |||| | ||| || |||||||||||| |||| ||||||||||||| || || | | | | ||||| |||||    
T  39268339 ttgaaattttaggcctaactcatccttaaaaaaccggttcataaggtgaggagtgcctccaatttataaactcttatcaagagttttatctatccgatgt 39268240  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  39268239 gggacttgggtttttcccaata 39268218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 24918276 - 24918201
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||| ||||||||| |||| |||| | | || | ||||||| |||| ||||| ||||||||||||    
T  24918276 tattgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgagtagtgcctcctctttataaactct 24918201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 3015464 - 3015609
Alignment:
Q  145 ctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttg 244  Q
    ||||| ||||| ||||||||| || | ||| | ||||| ||||||||  || ||||||| |||||| ||    ||||||||||  ||| ||| ||||| |    
T  3015464 ctcctctttatgaactctcatcaagagtctcatctatccgatgtggggcttgggtttttcccaatacacccc-ctcacgcccatcactctttgggcttgg 3015562  T
Q  245 tgcgtgaataaataggtgatcattgaattcgacaaactctgatacca 291  Q
    ||||||||||  ||||||  | ||||||||||||| |||||||||||    
T  3015563 tgcgtgaataggtaggtggcccttgaattcgacaagctctgatacca 3015609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 10668449 - 10668351
Alignment:
Q  113 cttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttttccaatat 211  Q
    |||| |||| ||| |||| |||||||||||||||||| ||| |||||||| || || | | | | |||| |||||||||| || ||||||| |||||||    
T  10668449 cttacaaaaccagcttataaggtgaggagtgtctcctctttgtaaactcttatcaagagttttatctatttgatgtgggacttgggtttttcccaatat 10668351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 1028084 - 1028157
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| |||||||||  | | |||| | |||| | |||||||||||| ||||| ||||||||||||    
T  1028084 ttgaaatttggggcctaactcatcgtcacaaaaccggtttgtaaggtgaggagtgcctcctctttataaactct 1028157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 2908760 - 2908881
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||| || ||||| |||||||||| |  | |||| |||   |||||||||||    
T  2908760 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactattctcaaaagtcttgtctatctgatgt 2908859  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || | ||||| ||||||    
T  2908860 gggacttggatttttcccaata 2908881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 4465176 - 4465249
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||  |||||||| |||| |||| ||| || | |||||||||||||||||| ||  ||||||||    
T  4465176 ttgaaatttggggcttaactcatccttacaaaaccagcttttaaggtgaggagtgtctcctcttagtaaactct 4465249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 12965237 - 12965310
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||||||||  |||| ||||||||||||    
T  12965237 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcttcctctttataaactct 12965310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 13843810 - 13843737
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||| | ||||| ||||||||||||    
T  13843810 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagcgcctcctctttataaactct 13843737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 24994182 - 24994109
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | ||||||| |||| ||||| ||||||||||||    
T  24994182 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgagtagtgcctcctctttataaactct 24994109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 28156351 - 28156278
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||| |||||||||| |||| | || ||| || | ||||||||| || ||||| ||||||||||||    
T  28156351 ttgaaatttgggttctaactcatccttacataaccagcttgtaaggtgaggattgcctcctctttataaactct 28156278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 24792124 - 24792184
Alignment:
Q  100 ggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    ||||||||||||||||| |||| | | || |  ||||||||||||||||| ||||||||||    
T  24792124 ggtctaactcattcttacaaaaccggcttgtacggtgaggagtgtctcctctttataaact 24792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 30770058 - 30770106
Alignment:
Q  92 aaatttggggtctaactcattcttataaaatcagtttatgaggtgagga 140  Q
    |||||||||| ||||||||| |||| |||| | ||||||||||||||||    
T  30770058 aaatttggggcctaactcatccttacaaaaccggtttatgaggtgagga 30770106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 291
Target Start/End: Complemental strand, 32667296 - 32667094
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||| |||| || ||||| | |||||||||| || || | ||| | |||||||||||    
T  32667296 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtaaggattgcctcctctatataaactcttatcaagagtcttatctatctgatgt 32667197  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    |||| || ||||||| |||||| ||     |||||||||  ||| ||| ||||| ||||||||||   ||| ||  | ||||||||||||| ||||||||    
T  32667196 gggacttcggtttttcccaatacacccccgtcacgcccagcactctttgggcttggtgcgtgaatcggtagatggcccttgaattcgacaagctctgata 32667097  T
Q  289 cca 291  Q
    |||    
T  32667096 cca 32667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 6183357 - 6183430
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||||||||||| |||| |||| | | || | ||||||| |||||||||| ||||||||||||    
T  6183357 ttgaaatttggggtctaactcatccttacaaaaccggcttgtaaggtgagaagtgtctcctctttataaactct 6183430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 10429852 - 10429779
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||||||||||||| |||| |||| | | || | || ||||||||||||||| ||||||||||||    
T  10429852 ttgaaatttggggtctaactcatccttacaaaaccggcttgtaagatgaggagtgtctcctctttataaactct 10429779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 41002346 - 41002273
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||||  |||||||| ||||||||||| |||||| ||||||| | |||||| | ||||||||||||    
T  41002346 ttgaaatttggggcataactcatccttataaaatcggtttataaggtgagaaatgtctcatctttataaactct 41002273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 5721642 - 5721539
Alignment:
Q  91 gaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgg 190  Q
    |||||||| ||||||| |||| |||||||||    || || ||||| |||||||||| | |||||||||||| ||||||||||| | |||| |||||||     
T  5721642 gaaatttgaggtctaattcatccttataaaactgattcataaggtggggagtgtctcttctttataaactcttataaaaaatcttatctatatgatgtgt 5721543  T
Q  191 gatt 194  Q
    ||||    
T  5721542 gatt 5721539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 291
Target Start/End: Complemental strand, 17727519 - 17727313
Alignment:
Q  87 tattgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgat 186  Q
    |||| |||||||||| ||||||||| |||| |||| | | || | ||||||||| || || || ||||||||||||  | || | ||| | ||||| |||    
T  17727519 tattaaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgccttctctttataaactcttctcaagagtcttatctatccgat 17727420  T
Q  187 gtgggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaata--aataggtgatcattgaattcgacaaactct 284  Q
    |||||| || ||||||| |||||| ||    ||||||||||  ||| ||| ||||| |||||||||||    ||||||  | ||||||||||||| ||||    
T  17727419 gtgggacttgggtttttcccaatacacccccctcacgcccagcactctttgggcttggtgcgtgaataggtttaggtggcccttgaattcgacaagctct 17727320  T
Q  285 gatacca 291  Q
    |||||||    
T  17727319 gatacca 17727313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 39108468 - 39108398
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaac 159  Q
    ||||||| ||||||||||||||| |||| |||| | |||||| ||||||||| |||||||| | |||||||    
T  39108468 ttgaaatatggggtctaactcatccttacaaaaccggtttataaggtgaggattgtctcctctatataaac 39108398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 12432011 - 12431890
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||| ||||| |||| |||| | | || | ||||||||| |||||||| ||||||||||||  | || | ||| | ||||| |||||    
T  12432011 ttgaaatttggggcctagctcatccttacaaaaccggcttgtaaggtgaggattgtctcctctttataaactcttctcaagagtcttatctatccgatgt 12431912  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || ||||||| ||||||    
T  12431911 gggacttgggtttttcccaata 12431890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 12432218 - 12432097
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||  ||||||||| |||| |||| || ||| | ||||||||| || ||||| ||||||||||||  | || | ||| | ||||| |||||    
T  12432218 ttgaaatttgggacctaactcatccttaaaaaaccaatttgtaaggtgaggattgcctcctctttataaactcttctcaagattcttatctatccgatgt 12432119  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| || | ||||||||||||    
T  12432118 gggacttggattttttccaata 12432097  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 21214192 - 21214265
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  21214192 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 21214265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 29684332 - 29684259
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| || |||||||||||||||||||||  ||| | ||||||||| || ||||| |||||| |||||    
T  29684332 ttgaaatttgaggcctaactcattcttataaaatcgttttgtaaggtgaggattgcctcctctttatatactct 29684259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 31761245 - 31761124
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    ||||||||||||| ||||||||| |||| |||| ||  || | ||||||||| || ||| | | ||||||||||  | |||| ||| | ||||| |||||    
T  31761245 ttgaaatttggggcctaactcatccttacaaaaccaacttgtaaggtgaggattgcctcttctatataaactcttctcaaaagtcttatctatccgatgt 31761146  T
Q  189 gggatttaggttttttccaata 210  Q
    |||| |||||||||| ||||||    
T  31761145 gggacttaggtttttcccaata 31761124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 42768325 - 42768398
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  42768325 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 42768398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 43195897 - 43195824
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  43195897 ttgaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 43195824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 44266310 - 44266402
Alignment:
Q  100 ggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtggga 192  Q
    |||||||||||| | || |||||||| || |  | ||| ||||||||||| ||||||||||||  | |||||||| | |||||||||||||||    
T  44266310 ggtctaactcatccatacaaaatcagcttgtatgatgatgagtgtctcctctttataaactcttctcaaaaatcttatctatctgatgtggga 44266402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 10862375 - 10862316
Alignment:
Q  133 ggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtggga 192  Q
    ||||| ||||||||||| ||||||||||||  |||||||||| | ||||| |||||||||    
T  10862375 ggtgatgagtgtctcctctttataaactcttctaaaaaatcttatctatccgatgtggga 10862316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 291
Target Start/End: Complemental strand, 31761444 - 31761248
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgt 188  Q
    |||||||||||||  |||||||| |||| |||||| | || | ||||||||| || ||||| | |||||||||| || || | ||| | ||| | |||||    
T  31761444 ttgaaatttggggcttaactcatccttacaaaatcggcttgtaaggtgaggattgcctcctctatataaactcttattaagagtcttatctacccgatgt 31761345  T
Q  189 gggatttaggttttttccaatatacttttctcacgcccaatactatttaggctttgtgcgtgaataaataggtgatcattgaattcgacaaactctgata 288  Q
    |||| |||||||||      || |||   ||||| ||||| ||| ||| ||||| | |||||||| | ||||||  ||||||||||||||| |||||| |    
T  31761344 gggacttaggtttt------tacactcccctcacacccaacactctttgggcttggggcgtgaatcagtaggtggccattgaattcgacaagctctgaaa 31761251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 5424773 - 5424835
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctat 151  Q
    ||||||||||||||||||||||| |||| |||| | | || | ||||||||||||| ||||||    
T  5424773 ttgaaatttggggtctaactcatccttacaaaaccggcttgtaaggtgaggagtgtgtcctat 5424835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 8044536 - 8044658
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcct-atttataaactctcataaaaaatctaaactatctgatg 187  Q
    ||||||||||||  ||||||||| |||| ||||   ||| || |||||||||||| |||||  |||||||||||| || || | ||| | ||||||||||    
T  8044536 ttgaaatttgggacctaactcatccttacaaaactggttcataaggtgaggagtgcctcctcttttataaactcttatcaagagtcttatctatctgatg 8044635  T
Q  188 tgggatttaggttttttccaata 210  Q
     |||| || ||||||| ||||||    
T  8044636 cgggacttgggtttttcccaata 8044658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 10849485 - 10849555
Alignment:
Q  92 aaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||| ||||||||| |||| |||| ||  || | |||||||||||| ||||| ||||||||||||    
T  10849485 aaatttggggcctaactcatccttacaaaaccaacttgtaaggtgaggagtgcctcctctttataaactct 10849555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 3976466 - 3976535
Alignment:
Q  93 aatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  3976466 aatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 3976535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 23054439 - 23054366
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| |   || | |||||||||||| ||||| ||||||||||||    
T  23054439 ttgaaatttggggcctaactcatccttacaaaaccgtcttgtaaggtgaggagtgcctcctctttataaactct 23054366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 27545108 - 27545180
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||||||| |||||||||| |||| |||| | |||| | ||||||||| || ||||| ||||||||||||    
T  27545108 ttgaaatttggg-tctaactcatccttacaaaaccggtttgtaaggtgaggattgcctcctctttataaactct 27545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 11969164 - 11969092
Alignment:
Q  90 tgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    |||||||| ||| ||||||||| |||| |||| | | || | |||||||||||| ||||| ||||||||||||    
T  11969164 tgaaattttgggcctaactcatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaactct 11969092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 15820103 - 15820135
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaa 121  Q
    |||||||||||||||||||||||||||| ||||    
T  15820103 ttgaaatttggggtctaactcattcttacaaaa 15820135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 15684 - 15757
Alignment:
Q  130 tgaggtgaggagtgtctcctatttataaactctcataaaaaatctaaactatctgatgtgggatttaggttttt 203  Q
    |||| ||||| |||||||||||||||||||||| || |||||||| | |||| |||||||| | || |||||||    
T  15684 tgagatgaggggtgtctcctatttataaactcttatcaaaaatcttatctatttgatgtggtacttgggttttt 15757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 3125 - 3184
Alignment:
Q  103 ctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||| ||||||||| ||| || |  ||||||||||||||||| ||||||||||||    
T  3125 ctaactcatccttataaaaccagcttctatggtgaggagtgtctcctctttataaactct 3184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1112
Description:

Target: scaffold1112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 1245 - 1299
Alignment:
Q  108 tcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||| ||||||||||| | |||||| |||||||| || ||||||||||||    
T  1245 tcattcttacaaaatcagtttttaaggtgatgagtgtcttctctttataaactct 1299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 2938 - 3011
Alignment:
Q  89 ttgaaatttggggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaactct 162  Q
    ||||||||||||| ||||||||| |||| |||| ||| || | | ||||||| || ||||| ||||||||||||    
T  2938 ttgaaatttggggcctaactcatccttacaaaaccagcttgtaaagtgaggattgcctcctctttataaactct 3011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 45382 - 45345
Alignment:
Q  91 gaaatttggggtctaactcattcttataaaatcagttt 128  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  45382 gaaatttggggtctaactcatccttataaaatcggttt 45345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 34507 - 34567
Alignment:
Q  100 ggtctaactcattcttataaaatcagtttatgaggtgaggagtgtctcctatttataaact 160  Q
    ||||||||||||||||| |||| | | || |  ||||||||||||||||| ||||||||||    
T  34507 ggtctaactcattcttacaaaaccggcttgtacggtgaggagtgtctcctctttataaact 34567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 193079 - 193047
Alignment:
Q  178 ctatctgatgtgggatttaggttttttccaata 210  Q
    ||||||||||||||| |||||||||||||||||    
T  193079 ctatctgatgtgggacttaggttttttccaata 193047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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