View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5086_low_20 (Length: 341)

Name: NF5086_low_20
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5086_low_20
NF5086_low_20
[»] chr5 (12 HSPs)
chr5 (4-323)||(13418673-13418992)
chr5 (11-301)||(13425554-13425845)
chr5 (14-255)||(13446263-13446504)
chr5 (52-253)||(13453118-13453319)
chr5 (17-256)||(13412308-13412547)
chr5 (29-206)||(13411596-13411773)
chr5 (37-246)||(13386045-13386254)
chr5 (122-253)||(13448892-13449025)
chr5 (36-211)||(13372495-13372670)
chr5 (37-209)||(13389870-13390042)
chr5 (52-211)||(13378249-13378408)
chr5 (52-125)||(13394414-13394487)
[»] chr4 (1 HSPs)
chr4 (29-237)||(47600457-47600665)
[»] chr8 (1 HSPs)
chr8 (49-126)||(28431615-28431692)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 13418673 - 13418992
Alignment:
Q  4 attctcagagatatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13418673 attctcagagatatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttatcgagacgct 13418772  T
Q  104 ccattgctgtgttgacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccc 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13418773 ccattgctgtgttgacataatcaataggaacaacctcaatatcaggcgttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccc 13418872  T
Q  204 tccaatcaaacttccagctactaacttcctccctacaaataatgtgaaattaataccggtgtaaaattatgcataatttgaatttagaactgtgtattaa 303  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  13418873 tccaatcaaacttccagctactaactttctccctacaaataatgtgcaattaatacaggtataaaattatgcataatttgaatttagaactgtgtattaa 13418972  T
Q  304 actatgctatgggagtatat 323  Q
    |||||||||||||| |||||    
T  13418973 actatgctatgggattatat 13418992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 13425554 - 13425845
Alignment:
Q  11 gagatatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgc 110  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  13425554 gagatatatcctgcaatgtttaagggcttggttttagtgtatttccaatatcaataacgaatcgatatttcacatctgctttctcgagacgctccattgc 13425653  T
Q  111 tgtgttgacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatc 210  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||    
T  13425654 tgtgttgacataatcaataggaacaacctcaatatcaggtgttacattgtgttcggccgcaaaatcaatcatttcttgagtctcctttatccctccaatc 13425753  T
Q  211 aaacttccagctactaacttcctccctacaaataatgtgaaattaataccggtgt-aaaattatgcataatttgaatttagaactgtgtatt 301  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  || | || ||| ||||||||||||||||| ||||| |||||    
T  13425754 aaacttccagctactaactttctccctacaaataatgtgaaattaatacaagtatcaacattctgcataatttgaatttaaaactgcgtatt 13425845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 13446263 - 13446504
Alignment:
Q  14 atatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgt 113  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| |||||| ||||  | |||||||||||||| ||    
T  13446263 atatatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggt 13446362  T
Q  114 gttgacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaa 213  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||||||  || |||||||||| |||||||||| |||| |||||||||||||| |||    
T  13446363 gttgacataatcaataggaacaacctcaatctcaggcgttacattgtgtttagcagcaaaatcaatcatttcttgagtctcttttatccctccaattaaa 13446462  T
Q  214 cttccagctactaacttcctccctacaaataatgtgaaatta 255  Q
    |||||||||| | |||| ||||||||||||||||||||||||    
T  13446463 cttccagctattgactttctccctacaaataatgtgaaatta 13446504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 52 - 253
Target Start/End: Original strand, 13453118 - 13453319
Alignment:
Q  52 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaacctcaatatcaggct 151  Q
    ||||||||||||||||| ||||||||||| |||||||||||    || |||||||| ||||||||||||||||||||||| |  | ||||||||||||||    
T  13453118 tttccaatatcaatcacaaatcgatatttcacatctgctttaagaaggcgctccatcgctgtgttgacataatcaataggaatgatctcaatatcaggct 13453217  T
Q  152 ttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaacttccagctactaacttcctccctacaaataatgtgaa 251  Q
    ||||||||||||| || |||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||| ||| |||||||| |||||||||||    
T  13453218 ttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatcaaacttcctgctactatctttctccctaccaataatgtgaa 13453317  T
Q  252 at 253  Q
    ||    
T  13453318 at 13453319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 13412308 - 13412547
Alignment:
Q  17 tatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgtt 116  Q
    |||||||||| ||| ||| |||||||||||| || ||||||||||||||||| ||||||||||| || ||| | ||  | ||||||| ||||||||||||    
T  13412308 tatcctgcaaagttcaagagcttggtttcagtgtgtttccaatatcaatcacaaatcgatatttcacgtctcccttagcaagacgctgcattgctgtgtt 13412407  T
Q  117 gacataatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaactt 216  Q
    |||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||| || |||||||||| ||||||||| ||||||||    ||||    
T  13412408 gacataatcaatcggaacaacctcgatatccggctttacattgtgttctgccgcaaaattaatcatttcttgagtctcctttaaccctccaacttgactt 13412507  T
Q  217 ccagctactaacttcctccctacaaataatgtgaaattaa 256  Q
    ||||||| ||  || |||||||  |||||| |||||||||    
T  13412508 ccagctaatatttttctccctatcaataatatgaaattaa 13412547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 13411773 - 13411596
Alignment:
Q  29 tttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaat 128  Q
    |||||||||||| ||| || || |||| ||| |||||||| ||||||||||||||||||| ||| | || ||||||||||||||||||||||||||| ||    
T  13411773 tttaagggcttgttttaagagtgtttctaatgtcaatcacaaatcgatatttaacatctgatttgtggacacgctccattgctgtgttgacataatccat 13411674  T
Q  129 agggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctcc 206  Q
    ||| |  || ||||||||||| | |||||||||||  || |||||||||| ||| |||||| | ||||| || |||||    
T  13411673 aggtatgacttcaatatcaggttgtacattgtgtttagcagcaaaatcaatcatctcttgagtttccttcattcctcc 13411596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 37 - 246
Target Start/End: Complemental strand, 13386254 - 13386045
Alignment:
Q  37 cttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaa 136  Q
    ||||||||||| || |||||||| || | ||| ||||||||||| |||||||||||   ||| ||||| ||||||||||| |||||||| | ||| ||||    
T  13386254 cttggtttcagagtgtttccaatgtcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataatccacaggaacaa 13386155  T
Q  137 cctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaacttccagctactaacttcctccc 236  Q
    | ||||| ||||| |||||||||||||  || ||||| |||| ||| |||||| ||||||| || | ||||||   |||||||||||| | ||| |||||    
T  13386154 cttcaatgtcaggttttacattgtgtttagcagcaaattcaagcatctcttgagtctccttaatgcttccaattccacttccagctaccagctttctccc 13386055  T
Q  237 tacaaataat 246  Q
    | | ||||||    
T  13386054 tgccaataat 13386045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 13448892 - 13449025
Alignment:
Q  122 aatcaatagggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcct--ttatccctccaatcaaacttcca 219  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |  | ||| ||||||| ||||||  |    
T  13448892 aatcgataggaacaacctcagtatcaggctttacattgtgttctgctgcaaaatcaatcatttcttgagtctctttatcatctctccaattaaactttaa 13448991  T
Q  220 gctactaacttcctccctacaaataatgtgaaat 253  Q
    ||||||| ||| | |||||| |||||||| ||||    
T  13448992 gctactatctttccccctaccaataatgtaaaat 13449025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 13372495 - 13372670
Alignment:
Q  36 gcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggaca 135  Q
    ||||| ||||| ||| |||||||| ||||| || || |||||||| ||||| |||||    ||||| ||||||||  | || |||||||| || || | |    
T  13372495 gcttgctttcaacgtgtttccaatgtcaataacaaagcgatatttcacatcagctttgagtagacgatccattgcactattcacataatctattggaata 13372594  T
Q  136 acctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatca 211  Q
    |||||||||||||| || ||||  ||||  ||||||||||||| |||||||||  |||||||||||||||||||||    
T  13372595 acctcaatatcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatca 13372670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 13390042 - 13389870
Alignment:
Q  37 cttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaa 136  Q
    ||||||||||  || ||||| ||||| | ||| ||||||||||| |||||||||||   ||| ||||| ||||||||||| |||||||| | ||| || |    
T  13390042 cttggtttcaaagtgtttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataatccacaggaacga 13389943  T
Q  137 cctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaat 209  Q
    | ||||| ||||| |||||  ||||||  || ||||| |||| ||| |||||| ||||||| || ||||||||    
T  13389942 cttcaatgtcaggttttacgctgtgtttagcagcaaagtcaagcatctcttgagtctccttgatgcctccaat 13389870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 13378249 - 13378408
Alignment:
Q  52 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaatagggacaacctcaatatcaggct 151  Q
    |||||||| ||||| || ||||||||||| ||||| |||||  | |  || |||||||| || || |||||||| |  || ||||||||||||||||| |    
T  13378249 tttccaatgtcaataacaaatcgatatttcacatcagctttgactaagcgttccattgcagtatttacataatccactggaacaacctcaatatcaggtt 13378348  T
Q  152 ttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatca 211  Q
    ||||    ||||  ||||||||||||| |||||||||  | ||||| |||||||||||||    
T  13378349 ttacgccatgtttggctgcaaaatcaatcatttcttgtgtttccttcatccctccaatca 13378408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 13394487 - 13394414
Alignment:
Q  52 tttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatc 125  Q
    ||||| ||||| | ||| ||||||||||| |||||||||||   ||| |||| |||||||||||| ||||||||    
T  13394487 tttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgcttcattgctgtgttaacataatc 13394414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 47600457 - 47600665
Alignment:
Q  29 tttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatcaat 128  Q
    |||||| ||||||||| || || |||||||| |||||||| ||||||||||| |||||||||||   ||| ||||||||||| ||||| |||||||| ||    
T  47600457 tttaagagcttggtttgagagtgtttccaatgtcaatcacaaatcgatatttgacatctgctttgaggagtcgctccattgcagtgttaacataatccat 47600556  T
Q  129 agggacaacctcaatatcaggctttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaacttccagctactaac 228  Q
    |||||  || |||||   ||| |||||||||||||  || |||||||||| ||| |||||| ||||||| |||||||||||   |||||||||||||| |    
T  47600557 agggatgacttcaatggtaggttttacattgtgtttagcagcaaaatcaagcatatcttgagtctccttcatccctccaatattacttccagctactatc 47600656  T
Q  229 ttcctccct 237  Q
    || ||||||    
T  47600657 tttctccct 47600665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 28431692 - 28431615
Alignment:
Q  49 gtatttccaatatcaatcacgaatcgatatttaacatctgctttctcgagacgctccattgctgtgttgacataatca 126  Q
    ||||| ||||||||||| || ||||||||||| |||||||||||    |||||||||| ||| ||||| |||||||||    
T  28431692 gtattcccaatatcaataacaaatcgatatttgacatctgctttaagcagacgctccaatgcagtgttcacataatca 28431615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University