View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_low_23 (Length: 320)
Name: NF5086_low_23
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 125 - 302
Target Start/End: Original strand, 36208549 - 36208724
Alignment:
| Q |
125 |
aaagaaacgatgtttcttatcacaccaccctcaaagggataagnnnnnnnttacaatcatttgcatgttttcaagcatcccttactcttccaatcctcaa |
224 |
Q |
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| T |
36208549 |
aaagaaaagatgttccttgtcacaccaccctcaaagggataagaaaaag--tacaatcatttgcatattttcaagcatcccttactcttccaattctcag |
36208646 |
T |
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| Q |
225 |
atatacttgaaacttggcaatcttttttccatcttctccccaagcaagtttgaattttttaataacatcatccgtaag |
302 |
Q |
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| T |
36208647 |
atatacttgaaacttggcaatcttttttccatcttctccccaagcaagtttgaatttttcaataacatcatcagtaag |
36208724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 56 - 302
Target Start/End: Original strand, 36205394 - 36205637
Alignment:
| Q |
56 |
tttcaatcattctcaaaagccagcttaattatttaagtagtaacaacgaagcaagcttatttaatcattaaagaaacgatgtttcttatcacaccaccct |
155 |
Q |
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|||||||||||||| ||| || ||||||||| |||||||| | | |||| || |||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
36205394 |
tttcaatcattctctgtagctagtttaattatt-aagtagtatccatgaagtaaacttattcaatcaataaagaaaagatgtttcttatcacaccaccct |
36205492 |
T |
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| Q |
156 |
caaagggataagnnnnnnnttacaatcatttgcatgttttcaagcatcccttactcttccaatcctcaaatatacttgaaacttggcaatcttttttcca |
255 |
Q |
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| T |
36205493 |
caaagggataagaagaag--tacaatcatttgcataatttcaagcatccattactcttccaattctcaaatatacttgaaacttgacagtcttttggcca |
36205590 |
T |
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| Q |
256 |
tcttctccccaagcaagtttgaattttttaataacatcatccgtaag |
302 |
Q |
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| T |
36205591 |
tcttcaccacgagcaagtttaaaattttcaataacatcctccttaag |
36205637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 36208477 - 36208546
Alignment:
| Q |
28 |
actaggttttctcctccggaatttctgctttcaatcattctcaaaagccagcttaattatttaagtagta |
97 |
Q |
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||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36208477 |
actagtttttctcctctggaatatctgctttcaatcattctcaaaagctagcttaattatttaagtagta |
36208546 |
T |
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