View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5086_low_24 (Length: 304)
Name: NF5086_low_24
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 288
Target Start/End: Complemental strand, 35201168 - 35200907
Alignment:
| Q |
29 |
atagcattttctttt-ctttcaagttgttagtatcaagatcttaataacatgaacaaaaaatataagacaattgcatggaccttttacagataaacatac |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35201168 |
atagcattttctttttctttcaagttgttagtatcaagatcttaataacatgaacaaaaaatataagacaattgcatggaccttttacagataaacatac |
35201069 |
T |
|
| Q |
128 |
gtatatattaggtaataaagatggtttctctattaagatagtatttattcataaagggagagacaaattaacagaagtatataatgataaac-nnnnnnn |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35201068 |
gtatatattaggtaataaagatggtttctctattaagatagtatttattcataaagggagagacaaattaacagaagtatataatgataaacaaaaataa |
35200969 |
T |
|
| Q |
227 |
nnnnnntgaaacaagaacaatcaatatgtttatatgatgtactaaaagttccaaatgaaagg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35200968 |
aaaaaatgaaacaagaacaatcaatatgtttatatgatgtactaaaagttccaaatgaaagg |
35200907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University