View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_low_26 (Length: 279)
Name: NF5086_low_26
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 23423078 - 23423323
Alignment:
| Q |
16 |
gttcaaaaacaaactttgttggtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctac |
115 |
Q |
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| T |
23423078 |
gttcaaaaacaaactttgtttgtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctac |
23423177 |
T |
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| Q |
116 |
ttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctctgagttcatggacacaacaaaaacatttgacattcca |
215 |
Q |
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| T |
23423178 |
ttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctttgagttcatggacacaacaaaaacatttgacattcca |
23423277 |
T |
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| Q |
216 |
gattcaaatgtttcttttaaggtaaaagattttcctgaccctgttc |
261 |
Q |
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| T |
23423278 |
gtttcaaatgtttcttttaaggtaaaagattttcctgaccctgttc |
23423323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 549550 - 549305
Alignment:
| Q |
16 |
gttcaaaaacaaactttgttggtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549550 |
gttcaaaaacaaactttgttggtttggtttttgatcttttctcaagtgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgctac |
549451 |
T |
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| Q |
116 |
ttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctctgagttcatggacacaacaaaaacatttgacattcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
549450 |
ttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctttgagttcatggacacaacaaaaacatttgacattcca |
549351 |
T |
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| Q |
216 |
gattcaaatgtttcttttaaggtaaaagattttcctgaccctgttc |
261 |
Q |
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| T |
549350 |
gtttcaaatgtttcttttaaggtaaatgattttcctgaccctgttc |
549305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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