View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_low_3 (Length: 548)
Name: NF5086_low_3
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 3435755 - 3435390
Alignment:
| Q |
16 |
atacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnnnttccattcc |
115 |
Q |
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| T |
3435755 |
atacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaatttcccattcc |
3435656 |
T |
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| Q |
116 |
atgcttgcaaagaaactccataaattcgaatccgtgcacctccttcaaatttttaaaatatatattccaattaaaagatactattccacgcaatagtatc |
215 |
Q |
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| T |
3435655 |
atgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttcaaat--ttaacaca-atctt---------------tattccatgcaatagtatc |
3435574 |
T |
|
| Q |
216 |
tcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-ttgtaaaaagatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3435573 |
tcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagattccatttaaaatatatattacgaaatcgttgttgtaaaaagatt |
3435474 |
T |
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| Q |
315 |
cgttttggaaatgaagttggctcctttannnnnnnaatgttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
398 |
Q |
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| T |
3435473 |
cgttttggaaatgaagttggctcctttatttttttaatgttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 530
Target Start/End: Complemental strand, 3435304 - 3435259
Alignment:
| Q |
485 |
gttcgttaattttctatccccgtgaccaattacaagcattcaccat |
530 |
Q |
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| T |
3435304 |
gttcgttaattttctatccccgtgaccaattataagcattcaccat |
3435259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 17964288 - 17964370
Alignment:
| Q |
16 |
atacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatct |
98 |
Q |
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|||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| ||||| ||||||||||||||||||||| |
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| T |
17964288 |
atacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacattcgactaaaatcaaaagcacataatct |
17964370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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