View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_low_30 (Length: 252)
Name: NF5086_low_30
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34215897 - 34215662
Alignment:
| Q |
1 |
aggttaatggtaacacaggttctgtcatgtccaaaggtagtagcatgctcgcgattcagtcagattttttggcaactactgtagttcataatggtaaggc |
100 |
Q |
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| T |
34215897 |
aggttaatggtaacacaggttctgtcatgtccaaaggtagtagcatgctcgtgattcagtcagattttttggcaactactgtagttcataatggtaaggc |
34215798 |
T |
|
| Q |
101 |
aggttatgtcatgttcgaaggcagtagcatgctcgcggttcagcctaattttttggcagatacagtagatggtaacgcaggttctgtcatgtccgaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34215797 |
aggttatgtcatgttcgaaggcagtagcatgctcgcggttcagcctaattttttggcagatacagtagatggtaacgcaggttctgtcatgtccgaaggt |
34215698 |
T |
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| Q |
201 |
aatagcatgctcacacaaagtgaaattttagttcat |
236 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
34215697 |
aatagcatgctcacgcaaagtgaaattttagttcat |
34215662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 11212848 - 11213079
Alignment:
| Q |
5 |
taatggtaacacaggttctgtcatgtccaaaggtagtagcatgctcgcgattcagtcagattttttggcaactactgtagttcataatggtaaggcaggt |
104 |
Q |
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| T |
11212848 |
taatggtaacgcaggttctgtcatgtccgaaggcagtagcatgctcgcggttcagtctgattttttggcagctgcggtagtccataatggtaatgcaggt |
11212947 |
T |
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| Q |
105 |
tatgtcatgttcgaaggcagtagcatgctcgcggttcagcctaattttttggcagatacagtagatggtaacgcaggttctgtcatgtccgaaggtaata |
204 |
Q |
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| T |
11212948 |
tctgtcatgtccaaaaacagtagaatgctcacggttcagcctgattctttggcagatgcggtagatggtaacgcaggttctgtcatgtccgaaggcaata |
11213047 |
T |
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| Q |
205 |
gcatgctcacacaaagtgaaattttagttcatc |
237 |
Q |
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| T |
11213048 |
gcatgctca-tgaaagtgaaattttagttcatc |
11213079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 18485254 - 18485408
Alignment:
| Q |
89 |
taatggtaaggcaggttatgtcatgttcgaaggcagtagcatgctcgcggttcagcctaattttttggcagatacagtag------atggtaacgcaggt |
182 |
Q |
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||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||| |||| |
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| T |
18485254 |
taatggtaacgcaagttctgtcatgtctgaaggcagtagcatgctcgcggttcagtttaattttttggcagatgcggtagttcttaatggtaacataggt |
18485353 |
T |
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| Q |
183 |
tctgtcatgtccgaaggtaatagcatgctcacacaaagtgaaattttagttcatc |
237 |
Q |
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| T |
18485354 |
tctgtcatgttcgaaggcaatagcatgctcacgcatagagaaattttagttcatc |
18485408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 18485250 - 18485383
Alignment:
| Q |
1 |
aggttaatggtaacacaggttctgtcatgtccaaaggtagtagcatgctcgcgattcagtcagattttttggcaactactgtagttcataatggtaaggc |
100 |
Q |
| |
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|||||||||||||| || ||||||||||||| |||| ||||||||||||||| |||||| ||||||||||| | | ||||||| ||||||||| |
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| T |
18485250 |
aggttaatggtaacgcaagttctgtcatgtctgaaggcagtagcatgctcgcggttcagtttaattttttggcagatgcggtagttcttaatggtaacat |
18485349 |
T |
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| Q |
101 |
aggttatgtcatgttcgaaggcagtagcatgctc |
134 |
Q |
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||||| ||||||||||||||||| |||||||||| |
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| T |
18485350 |
aggttctgtcatgttcgaaggcaatagcatgctc |
18485383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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