View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5086_low_33 (Length: 248)
Name: NF5086_low_33
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 23408337 - 23408568
Alignment:
| Q |
1 |
ccaactgtattttatgagaaaatgtattcagtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaattttcaagtca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23408337 |
ccaactatattttatgagaaaatgtattccgtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaagcaattttcatgtca |
23408436 |
T |
|
| Q |
101 |
aatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408437 |
aatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataat |
23408536 |
T |
|
| Q |
201 |
cgaaatgtctaagagcttgtaaacttagtcac |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
23408537 |
cgaaatgtctaagagctagtaaacttagtcac |
23408568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University