View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_low_6 (Length: 493)
Name: NF5086_low_6
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_6 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Complemental strand, 111312 - 110844
Alignment:
| Q |
9 |
ataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111312 |
ataatattcaccaaacagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
111213 |
T |
|
| Q |
109 |
aaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111212 |
aaaataatccactgtcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt |
111113 |
T |
|
| Q |
209 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111112 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
111013 |
T |
|
| Q |
309 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111012 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgca |
110913 |
T |
|
| Q |
409 |
cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
110912 |
cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt |
110844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 48772453 - 48772398
Alignment:
| Q |
422 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt |
477 |
Q |
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||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||| |
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| T |
48772453 |
ccctcctttaaacaaagaatctcttgaccaattaccctaccatccgttcttgattt |
48772398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 20646554 - 20647022
Alignment:
| Q |
9 |
ataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20646554 |
ataatattcaccaaacagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
20646653 |
T |
|
| Q |
109 |
aaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt |
208 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20646654 |
aaaataatccactgtcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagc |
20646753 |
T |
|
| Q |
209 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20646754 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
20646853 |
T |
|
| Q |
309 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgca |
408 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20646854 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattttccgataatttcctgcgca |
20646953 |
T |
|
| Q |
409 |
cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20646954 |
cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattatcataccatttgttcttgattt |
20647022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 19329124 - 19329069
Alignment:
| Q |
422 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt |
477 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
19329124 |
ccctcctttgaacaaagaatctcttgaccaattaccataccattcgttcttgattt |
19329069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 1592 - 1415
Alignment:
| Q |
7 |
agataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagac |
106 |
Q |
| |
|
|||||||| |||||| | ||| |||||||||||||| ||||||||||||| |||||| || || | |||||| |||| |||||||||| || ||||| |
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| T |
1592 |
agataatattcaccacatagcagctccttataatcttccagattttacaaaaacactctcagcagcaaaggaaagataatcatcatcaccgtatgaagac |
1493 |
T |
|
| Q |
107 |
acaaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaa |
184 |
Q |
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|||| | || ||| ||||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||| |
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| T |
1492 |
acaacagaacttactgtcataactattgaagaataaaagaaaattaagatttacatgaaaccaaatccattgatggaa |
1415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 44886051 - 44886103
Alignment:
| Q |
422 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttga |
474 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||| |||||| ||||||||||| |
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| T |
44886051 |
ccctcctttgaacaaagaatttcttgaccaattatcataccgtttgttcttga |
44886103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 63991 - 63936
Alignment:
| Q |
422 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt |
477 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| || |||||||| ||||||||||| |
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|
| T |
63991 |
ccctcctttgaacaaagaatttcttgaccaatcacaataccattcgttcttgattt |
63936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 22639028 - 22638973
Alignment:
| Q |
422 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt |
477 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| || ||||||||||||||||| |
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|
| T |
22639028 |
ccctcctttgaacaaagaatctcctgaccaattatcaatccatttgttcttgattt |
22638973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 477
Target Start/End: Complemental strand, 16080351 - 16080295
Alignment:
| Q |
422 |
ccctcctttgaacaaacaatctcttgaccaa-ttaccataccatttgttcttgattt |
477 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||| |||||| ||||||||||| |
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|
| T |
16080351 |
ccctccttagaacaaagaatctcttgaccaatttaccctaccatccgttcttgattt |
16080295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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