View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5086_low_8 (Length: 438)
Name: NF5086_low_8
Description: NF5086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5086_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 35201587 - 35201176
Alignment:
| Q |
12 |
atgatataatactatatggtagattaattaattgaattgtgtagctaggttcacgtgatgggtttggtctaagatggaatttgggtgataaaataatgga |
111 |
Q |
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| T |
35201587 |
atgatataatactatatggtagattaattaattgaattgtgtagctaggttcacgtgatgggtttggtctaagatggaatttgggtgataaaataatgga |
35201488 |
T |
|
| Q |
112 |
attggaattgtgcagtggaatataaaaaagaacattcgaaatccaagaaagggacatagaggtaaagcgtgattaggatgaatcttgagtggttcaataa |
211 |
Q |
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| T |
35201487 |
attggaattgtgcagtggaatataaaaaagaacattcgaaatccaagaaagggacatagaggtaaagcgtgattaggatgaatcttgagtggttcaataa |
35201388 |
T |
|
| Q |
212 |
agnnnnnnnnntagtaaaaataaagaacacacacccacatatatactccaacgtaacattcttttgtgcagagagatacattgagggaatccctaagacc |
311 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35201387 |
agaaaaaaaaatagtaaaaataaagaacacacacccacatatatactccaacgtaacattcttttgtgcagagagatacattgagggaatccctaagacc |
35201288 |
T |
|
| Q |
312 |
tgctcaaagccctaggcatgttgtaataaggcaaaatcccacttcaaaattttctaatatttaatttaattagtatagtatataattcaaaaataatgta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35201287 |
tgctcaaagccctaggcatgttgtaataaggcaaaatcccacttcaaatttttctaatatttaatttaattagtatagtatataattcaaaaataatgta |
35201188 |
T |
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| Q |
412 |
acttaggtcaag |
423 |
Q |
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|||||||||||| |
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| T |
35201187 |
acttaggtcaag |
35201176 |
T |
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