View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5087-Insertion-2 (Length: 711)

Name: NF5087-Insertion-2
Description: NF5087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5087-Insertion-2
NF5087-Insertion-2
[»] chr3 (8 HSPs)
chr3 (8-477)||(49187542-49188011)
chr3 (536-711)||(49188070-49188245)
chr3 (562-704)||(49191833-49191974)
chr3 (585-711)||(49212972-49213098)
chr3 (585-704)||(49208132-49208251)
chr3 (582-704)||(49202958-49203080)
chr3 (284-399)||(49202535-49202650)
chr3 (274-370)||(49191354-49191451)
[»] chr1 (5 HSPs)
chr1 (542-701)||(37030590-37030746)
chr1 (585-710)||(32592569-32592694)
chr1 (585-710)||(31527272-31527397)
chr1 (566-647)||(51824272-51824352)
chr1 (653-702)||(51824717-51824766)
[»] chr8 (1 HSPs)
chr8 (585-698)||(26756496-26756611)


Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 49187542 - 49188011
Alignment:
Q  8 caaattacataccacaagttaattaccacatgattaagttaactgataaatgttcaacaactcttccatcatgaaattatacttaattgtataataattc 107  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187542 caaattacataccacaagttaattaccacatgattaaagtaactgataaatgttcaacaactcttccatcatgaaattatacttaattgtataataattc 49187641  T
Q  108 ataggtaaattaactatggagtttcggtaccatcaattaggaaacaatcaaaggccaacttctcattgtactggcgagggactctgacttttgggaaaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187642 ataggtaaattaactatggagtttcggtaccatcaattaggaaacaatcaaaggccaacttctcattgtactggcgagggactctgacttttgggaaaca 49187741  T
Q  208 ctcaatggccaactatgatcctatactcatgtgtatatctttgatcctatataaaacatttatgacgacaaaactaagagaacaaatcaagtagcctaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  49187742 ctcaatggccaactatgatcctatactcatgtgtatatctttgatcctatataaaacatttatcacgacaaaactaagagaacagatcaagtagtctaat 49187841  T
Q  308 tatttaaagaatgcaaatttactattccatataacataatcaataatgaactgaatagagtattttaaaaattagaatatctttacattagtccacaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187842 tatttaaagaatgcaaatttactattccatataacataatcaataatgaactgaatagagtattttaaaaattagaatatctttacattagtccacaaaa 49187941  T
Q  408 gttgtctttaaaatactccattagaatgtaattagtgttatcaaagaggtgccaaaattaaatcacagta 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187942 gttgtctttaaaatactccattagaatgtaattagtgttatcaaagaggtgccaaaattaaatcacagta 49188011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 536 - 711
Target Start/End: Original strand, 49188070 - 49188245
Alignment:
Q  536 cagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagcttt 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49188070 cagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagcttt 49188169  T
Q  636 aagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagcc 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188170 aagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagcc 49188245  T

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Target: chr3; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 562 - 704
Target Start/End: Original strand, 49191833 - 49191974
Alignment:
Q  562 tatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcat 661  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||    
T  49191833 tatatatatttgcat-gtactaaactaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcat 49191931  T
Q  662 tcatcctctcgacttcaccttgcaactcagcttcccttagagc 704  Q
    |||||||||| ||||||||||| |||||||| |||||||||||    
T  49191932 tcatcctctcaacttcaccttgtaactcagcatcccttagagc 49191974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 585 - 711
Target Start/End: Original strand, 49212972 - 49213098
Alignment:
Q  585 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 684  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||    
T  49212972 actaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgc 49213071  T
Q  685 aactcagcttcccttagagcaacagcc 711  Q
    |||||||||||||||||||| ||||||    
T  49213072 aactcagcttcccttagagccacagcc 49213098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 585 - 704
Target Start/End: Original strand, 49208132 - 49208251
Alignment:
Q  585 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 684  Q
    ||||||||| || ||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||    
T  49208132 actaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgc 49208231  T
Q  685 aactcagcttcccttagagc 704  Q
    ||||||||||||||||||||    
T  49208232 aactcagcttcccttagagc 49208251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 582 - 704
Target Start/End: Original strand, 49202958 - 49203080
Alignment:
Q  582 taaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcacct 681  Q
    |||||||||||| |||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||| ||||||||||| || |||||||||    
T  49202958 taaactaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcacct 49203057  T
Q  682 tgcaactcagcttcccttagagc 704  Q
    || |||||||| |||||||||||    
T  49203058 tgtaactcagcatcccttagagc 49203080  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 49202535 - 49202650
Alignment:
Q  284 agagaacaaatcaagtagcctaattatttaaagaatgcaaatttactattccatataacataatcaataatgaactgaatagagtattttaaaaattaga 383  Q
    ||||||| ||||||  || | ||||||||||| ||||||| || |||  |||||||| || |||||||||| || |||||| | ||| ||||||| ||||    
T  49202535 agagaactaatcaaacagtccaattatttaaaaaatgcaacttgacttctccatatagcagaatcaataatcaattgaataaactatattaaaaaataga 49202634  T
Q  384 atatctttacattagt 399  Q
    ||||||||||||||||    
T  49202635 atatctttacattagt 49202650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 370
Target Start/End: Original strand, 49191354 - 49191451
Alignment:
Q  274 gacaaaactaagagaacaaatcaagtagcctaattatttaaagaa-tgcaaatttactattccatataacataatcaataatgaactgaatagagtat 370  Q
    |||||||  ||||||||||||||||||| | | ||||||||| || ||||| || |||| ||||||||||| |||||||||| || |||||| |||||    
T  49191354 gacaaaaacaagagaacaaatcaagtagtccagttatttaaaaaaatgcaacttgactactccatataacagaatcaataatcaattgaataaagtat 49191451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 542 - 701
Target Start/End: Original strand, 37030590 - 37030746
Alignment:
Q  542 ataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagctt 641  Q
    ||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||    
T  37030590 ataaaaaatgaatcaagttatatatat--ttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagctt 37030686  T
Q  642 ctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttag 701  Q
     ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  37030687 ttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttag 37030746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 585 - 710
Target Start/End: Complemental strand, 32592694 - 32592569
Alignment:
Q  585 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 684  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  32592694 actaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 32592595  T
Q  685 aactcagcttcccttagagcaacagc 710  Q
    |||||||||||||||||||| |||||    
T  32592594 aactcagcttcccttagagccacagc 32592569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 585 - 710
Target Start/End: Original strand, 31527272 - 31527397
Alignment:
Q  585 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 684  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  31527272 actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 31527371  T
Q  685 aactcagcttcccttagagcaacagc 710  Q
    |||||||||||||||||||| |||||    
T  31527372 aactcagcttcccttagagccacagc 31527397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 566 - 647
Target Start/End: Original strand, 51824272 - 51824352
Alignment:
Q  566 tatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagt 647  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51824272 tatatttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagt 51824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 702
Target Start/End: Original strand, 51824717 - 51824766
Alignment:
Q  653 tcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttaga 702  Q
    |||| ||||||||| |||| || |||||||||||||||||||||||||||    
T  51824717 tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttaga 51824766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 585 - 698
Target Start/End: Original strand, 26756496 - 26756611
Alignment:
Q  585 actaaccttggtttcatattgaacactagctttgctgagta---aatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcacct 681  Q
    ||||||||||||||||||| | ||||||||||| || | ||   | |||| ||||||||||||||| |||||||| |||||||||||||| || ||||||    
T  26756496 actaaccttggtttcatat-gtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcacct 26756594  T
Q  682 tgcaactcagcttccct 698  Q
    |||||||||||||||||    
T  26756595 tgcaactcagcttccct 26756611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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